AnnotatedSnpCallSet-class {SNPchip} | R Documentation |
Container for genotype call data accompanied by SNP annotation
Objects can be created by calls of the form new("AnnotatedSnpCallSet", phenoData, experimentData, annotation, calls, callsConfidence, snpLocation, chromosomeAnnotation, chromosome)
.
chromosomeAnnotation
:data.frame
assayData
:AssayData
phenoData
:AnnotatedDataFrame
featureData
:AnnotatedDataFrame
contains annotation for the SNP's, such as chromosome, physical position, and alleles. experimentData
:MIAME
annotation
:.__classVersion__
:Versions
Class SnpCallSet
, directly.
Class eSet
, by class SnpCallSet
.
Class VersionedBiobase
, by class SnpCallSet
.
Class Versioned
, by class SnpCallSet
.
Robert Scharpf