AnnotatedSnpCopyNumberSet-class {SNPchip}R Documentation

Class "AnnotatedSnpCopyNumberSet"

Description

Container for copy number data

Objects from the Class

Objects can be created by calls of the form new("AnnotatedSnpCopyNumberSet", phenoData, experimentData, annotation, copyNumber, cnConfidence, snpLocation, chromosomeAnnotation, chromosome).

Slots

chromosomeAnnotation:
Object of class data.frame
assayData:
Object of class AssayData
phenoData:
Object of class AnnotatedDataFrame
experimentData:
Object of class MIAME
featureData:
Object of class AnnotatedDataFrame. Contains annotation for the SNP's, such as chromosome, physical position, and alleles.
annotation:
For 100k chips, "mapping50kHind240", "mapping50kXba240" , or "mapping100k". For 500k chips, mmust be "mapping250kNsp" or "mapping250kSty"
.__classVersion__:
Object of class Versions

Extends

Class SnpCopyNumberSet, directly. Class eSet, by class SnpCopyNumberSet. Class VersionedBiobase, by class SnpCopyNumberSet. Class Versioned, by class SnpCopyNumberSet.

Methods

Methods for AnnotatedSnpCopyNumberSet

Note

Author(s)

References

See Also

Examples






[Package SNPchip version 1.0.0 Index]