sort.arrayCGH {MANOR}R Documentation

sort clone-level information of a normalizaed arrayCGH object

Description

Usage

  sort.arrayCGH(x, decreasing = FALSE, position.var="Position",
chromosome.var="Chromosome", ...)

Arguments

x an object of type arrayCGH
decreasing (for compatibility with sort class) currently unused
position.var
chromosome.var
... further arguments to be passed to sort

Details

Note

People interested in tools for array-CGH analysis can visit our web-page: http://bioinfo.curie.fr.

Author(s)

Pierre Neuvial, manor@curie.fr.

See Also

norm.arrayCGH

Examples

data(spatial)

## sort a normalized array by clone position
gradient.norm <- sort.arrayCGH(gradient.norm)

report.plot(gradient.norm, main="Genomic profile after normalization")

[Package MANOR version 1.8.0 Index]