bget {KEGGSOAP} | R Documentation |
bget
is used for retrieving KEGG database entries specified by
a list of entry identifiers. It accepts all the KEGG bget commond line
options as a character string. Number of entries retrieved at a time
is restricted up to 100.
bget(bget.command)
bget.command |
bget.command a character string of KEGG
bget command |
a character string of KEGG bget search result.
Nianhua Li
http://www.genome.jp/kegg/docs/keggapi_manual.html#label:40
if(require("SSOAP") && require("XML")){ # retrieve two KEGG/GENES entries bget("eco:b0002 hin:tRNA-Cys-1") # retrieve nucleic acid sequences in a FASTA format bget("-f -n n eco:b0002 hin:tRNA-Cys-1") # retrieve amino acid sequence in a FASTA format bget("-f -n a eco:b0002") }