Pedigree and genetic relationship functions


[Package List] [Top]

Documentation for package `GeneticsPed' version 1.0.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

as.character.Pedigree Pedigree
as.factor.Pedigree Pedigree
as.integer.Pedigree Pedigree
as.Pedigree Pedigree
check Check consistency of data in pedigree
checkId Check consistency of data in pedigree
codeUnit ~~function to do ... ~~
extend Extend pedigree
family Find families (lines) in the pedigree
gameteFlowM Gene and gamete flow matrices
geneContribution Gene contribution or proportion of genes in pedigree by individual
geneFlowT Gene and gamete flow matrices
geneFlowTinv Gene and gamete flow matrices
generatePedigree Generate Pedigree example
generation Calculate generation value
gpi Genotype probability index
inbreeding Inbreeding coefficient
inverseAdditive Additive relationship matrix and its inverse
is.Pedigree Pedigree
isFounder Founder and non-founder individuals in the pedigree
kinship Additive relationship matrix and its inverse
mendelianSamplingD Gene and gamete flow matrices
model.matrix.Pedigree Model matrix for individuals with and without records
Mrode Pedigree and data examples from Mrode
Mrode2.1 Pedigree and data examples from Mrode
Mrode3.1 Pedigree and data examples from Mrode
nIndividual Number of individuals in a pedigree
Pedigree Pedigree
relationshipAdditive Additive relationship matrix and its inverse
removeIndividual Remove individual from pedigree
sort.Pedigree Sort pedigree
summary.Pedigree Pedigree summary
undocumented Undocumented functions