Empirical Bayes for Microarrays


[Package List] [Top]

Documentation for package `EBarrays' version 1.8.1

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

checkCCV Various plotting routines in the EBarrays package
checkConvergence Various plotting routines in the EBarrays package
checkModel Various plotting routines in the EBarrays package
coerce,character,ebarraysFamily-method Class of Families to be used in the EBarrays package
createExprSet Utility functions for the EBarrays package
eb.createFamilyGG Class of Families to be used in the EBarrays package
eb.createFamilyLNN Class of Families to be used in the EBarrays package
ebarraysEmFit-class Implements EM algorithm for gene expression mixture model
ebarraysFamily-class Class of Families to be used in the EBarrays package
ebarraysPatterns-class Utility functions for the EBarrays package
ebarraysPostProb-class Calculates posterior probabilities for expression patterns
ebPatterns Utility functions for the EBarrays package
ebplots Various plotting routines in the EBarrays package
emfit Implements EM algorithm for gene expression mixture model
emfit,ExpressionSet,character,ebarraysPatterns-method Implements EM algorithm for gene expression mixture model
emfit,ExpressionSet,ebarraysFamily,ebarraysPatterns-method Implements EM algorithm for gene expression mixture model
emfit,exprSet,character,ebarraysPatterns-method Implements EM algorithm for gene expression mixture model
emfit,exprSet,ebarraysFamily,ebarraysPatterns-method Implements EM algorithm for gene expression mixture model
emfit,matrix,character,ebarraysPatterns-method Implements EM algorithm for gene expression mixture model
emfit,matrix,ebarraysFamily,ebarraysPatterns-method Implements EM algorithm for gene expression mixture model
gould A dataset of class exprSet
plotMarginal Various plotting routines in the EBarrays package
postprob Calculates posterior probabilities for expression patterns
postprob,ebarraysEmFit,ExpressionSet-method Calculates posterior probabilities for expression patterns
postprob,ebarraysEmFit,exprSet-method Calculates posterior probabilities for expression patterns
postprob,ebarraysEmFit,matrix-method Calculates posterior probabilities for expression patterns
show,ebarraysEmFit-method Implements EM algorithm for gene expression mixture model
show,ebarraysFamily-method Class of Families to be used in the EBarrays package
show,ebarraysPatterns-method Utility functions for the EBarrays package
show,ebarraysPostProb-method Calculates posterior probabilities for expression patterns
utilities Utility functions for the EBarrays package