spike {CALIB} | R Documentation |
This SpikeList
object contains all the spikes in dataset
RG
.It is generated by the function
read.spike
from RG
and user-specified concentraion file in the CALIB package.
data(spike)
spike
is an SpikeList
object containing the following list components:
$R,$G,$Rb,$Gb,
$RArea,$GArea,$RConc,$GConc and $genes. It represents two
microarrays and 600 spikes, including 480 calibration controls, 96 ratio
controls and 24 negative controls.
For the source information, see the introduction of dataset RG
.
dataset RG
.
Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006) A calibration method for estimating absolute expression levels from microarray data. Bioinformatics 22: 1251-1258.
Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res. 14, 2176-2189.
data(spike) plotSpikeRG(spike,array=1)