batchAnalysis {BeadExplorer}R Documentation

Batch Analysis

Description

Batch analysis of Illumina BeadStudio V1 output files

Usage

batchAnalysis(bkd = "Offset", offset = NULL, method = "Quantile")

Arguments

bkd A character spcificying the background adjustment method. Options are "Offset" or "Base"
offset A numeric specifiying the offset value to add
method A character specifying a normalisation option. Options are "Quantile", "Qspline", "RobustQuantile"

Details

This is a wrapper function that looks for all files within the current working directory that end in 'gene profile.csv' and analyses them in series. The corresponding 'qcinfo.csv' files are also required within the working directory. The function basically repeats the default beadAnalysis function for every file in the directory. This function can currently only be used for files generated by BeadStudio version 1.

Value

None

Author(s)

Gareth Elvidge gareth.elvidge@well.ox.ac.uk

Examples

## Not run: 
batchAnalysis()
## End(Not run)

[Package BeadExplorer version 1.2.0 Index]