getQC2 {BeadExplorer}R Documentation

Generate QC data

Description

Generates QC data from version 2 of BeadStudio

Usage

getQC2(beadData, qcfile)

Arguments

beadData Object of class beadData-class
qcfile File path of the BeadStudio (v2) qc file that corresponds to the beadData-class object

Details

Generates QC data using the beadData object and its corresponding qcfile. The qcfile is produced from BeadStudio version two. In contrast to version one of BeadStudio, version 2 requires the user to save the qcfile manually as a '.txt' file. This can be done by selecting the 'Control Probe profile' tab in BeadStudio (V2) and saving this data. A mapping file with this package is used to map the Illumina 'ProbeID' to the control type. Currently only Human WG-6 BeadChips mapping files are supplied but others will be added in the future. The mapping file used is selected from the array type of the beadData argument.

Value

An object of class beadQC-class

Note

Author(s)

Gareth Elvidge gareth.elvidge@well.ox.ac.uk

See Also

See Also as help

Examples



[Package BeadExplorer version 1.2.0 Index]