plotSamples {BeadExplorer} | R Documentation |
Produces QC plots for each sample on the array
plotSamples(rbeadData, nbeadData, beadQC, savegraph = "png", width = 1200, height = 800, extension = "_Samples", col = NULL, annotation = TRUE, names = sampleNames(nbeadData), verbose = TRUE, ...)
rbeadData |
UnNormalised beadData-class object |
nbeadData |
Normalised beadData-class object |
beadQC |
beadQC-class object |
savegraph |
Character specfiying output graph type: "png", "bmp", "jpeg" or NULL for graph in console |
width |
Width in pixels of output graph |
height |
Width in height of output graph |
extension |
Suffix to apply to analysis name to create the filename |
col |
A vector of colours used to plot each sample in the beadData-class object, NULL uses default: rainbow |
annotation |
Logcial, specifying whether annotation data should be added to the plots |
names |
Names used to represent each sample, default is sample names |
verbose |
Logical,specifying if a commentary should be outputted |
... |
Arguments passed to plot |
Produces QC plots for each sample on the array. Often where filenames are long, these can get cut-off by the plot. In this case it is better to specify- names=1:6 (or greater if the number of samples is more). See package description for more information.
Nothing
Gareth Elvidge gareth.elvidge@well.ox.ac.uk
See Also as help
data(examplebeadData) data(examplebeadQC) ndata<-normalise(examplebeadData) plotSamples(examplebeadData, ndata, examplebeadQC)