getAnnot {BeadExplorer}R Documentation

Get annotation information

Description

Obtain annotation information for a given Illumina gene ID

Usage

getAnnot(id, manifest, searchFields = c("Target"), returnFields = "all")

Arguments

id A character or vector corresponding to the Illumina gene ID(s)
manifest A data.frame of manifest data as produced by readManifest
searchFields The manifest column name to search for ID
returnFields The manifest column names to return, use "all" to return all columns

Details

Obtain annotation information for a given Illumina gene ID(s)

Value

A data.frame containing annotation information for a given gene ID(s).

Author(s)

Gareth Elvidge gareth.elvidge@well.ox.ac.uk

See Also

See Also as help, readManifest

Examples

## Not run: 
man<-readManifest("d:\Bead_Set_Manifest\Human_WG-6.csv")
getAnnot("GI_23097300-A", man)
getAnnot(c("GI_23097300-A", "GI_21070955-A", "GI_4505876-A"), man)

# search for the gene symbol "NDRG1" in the "Symbol" column of the manifest file
getAnnot("NDRG1", man, searchFields="Symbol")
## End(Not run)

[Package BeadExplorer version 1.2.0 Index]