getQC2 {BeadExplorer} | R Documentation |
Generates QC data from version 2 of BeadStudio
getQC2(beadData, qcfile)
beadData |
Object of class beadData-class |
qcfile |
File path of the BeadStudio (v2) qc file that corresponds to the beadData-class object |
Generates QC data using the beadData object and its corresponding qcfile. The qcfile is produced from BeadStudio version two. In contrast to version one of BeadStudio, version 2 requires the user to save the qcfile manually as a '.txt' file. This can be done by selecting the 'Control Probe profile' tab in BeadStudio (V2) and saving this data. A mapping file with this package is used to map the Illumina 'ProbeID' to the control type. Currently only Human WG-6 BeadChips mapping files are supplied but others will be added in the future. The mapping file used is selected from the array type of the beadData argument.
An object of class beadQC-class
Gareth Elvidge gareth.elvidge@well.ox.ac.uk
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