boxplotArrays {BeadExplorer} | R Documentation |
Plots a series of boxplots for a BeadChip QC data
boxplotArrays(beadData, beadQC, qc, extension = "_boxplot", savegraph = NULL, width = 1200, height = 800, verbose = TRUE, ...)
beadData |
Object of class beadData-class |
beadQC |
Object of class beadQC-class |
qc |
data.frame created by readQC |
extension |
Character to add to the output file name |
savegraph |
Character to specify the output type ("png","bmp" or "jpeg") |
width |
Width in pixels of graph output |
height |
Height in pixels of graph output |
verbose |
Logical, provides output commentary |
... |
arguments passed to boxplot |
A graph of a boxplot of QC measures is produced. The function compares QC values for the current beadData and beadQC objects
to QC values from previous run analyses that have been stored in the log file (qc). The function is similar to dotplotArrays
except that the data is plotted as a box plot rather than a dot plot. This function is the choice where the number of previous analyses
in the log file is large.
None
Gareth Elvidge gareth.elvidge@well.ox.ac.uk
## Not run: data(examplebeadData) data(examplebeadQC) #attach(example.QC) #boxplotArrays(example.beadData, example.beadQC, example.QC) ## End(Not run)