beadData-class {BeadExplorer} | R Documentation |
A class to hold data information from a BeadChip experiment
Objects can be created by calls of the form new("beadData", ...)
.
fileOrigin
:"character"
: File paths of the data used to create the object param
:"list"
: Parameters extracted from the source files normMethod
:"character"
: The normalisation method applied to the object (if any) detExprs
:"matrix"
: BeadStudio detection scores exprs
:"exprMatrix"
: Unlogged intensity data se.exprs
:"exprMatrix"
: Standard errors of bead replicates description
:"character OR MIAME"
annotation
:"character"
: A name given to the analysisnotes
:"character"
: Notes reporterInfo
:"data.frame Or NULL"
: reporter infophenoData
:"phenoData"
: Phenotype data
Class "exprSet"
, directly.
Class "annotatedDataset"
, by class "exprSet"
.
signature(x = "beadData")
: subset for samplessignature(x = "beadData")
: boxplot of expression datasignature(object = "beadData")
: Obtain detection calls signature(object = "beadData")
: slot accessor method signature(object = "beadData")
: slot accessor method signature(object = "beadData")
: Number of transcripts signature(object = "beadData")
: slot accessor methodsignature(object = "beadData")
: Number of samples signature(x = "beadData")
: Plot pairwise intensity plots signature(object = "beadData")
: slot accessor method signature(object = "beadData")
: Obtain signal means signature(object = "beadData")
: Obtain summary of the data Gareth Elvidge gareth.elvidge@well.ox.ac.uk
data(examplebeadData) nGenes(examplebeadData)