write.sgr {ACME}R Documentation

Write Affy IGB .sgr format files

Description

The affy Integrated Genome Browser (IGB) is a powerful, fast browser for genomic data. The file format is simple (three columns: chromosome, location, and score) to generate. This function will write the sgr files associated with a aGFFcalc object. There will be either one or two files (default two) representing the raw data and the calculated data (which is output as -log10(val) for visualization purposes).

Usage

write.sgr(agff, raw = TRUE, vals = TRUE, directory = ".")

Arguments

agff An aGFFCalc object obtained after running do.aGFF.calc
raw Create a file for the raw data?
vals Create a file for the calculated p-values?
directory Give a directory for storing the files

Author(s)

Sean Davis

Examples

data(example.agff)
write.sgr(example.agff)

[Package ACME version 1.2.1 Index]