Analysis of high-density oligonucleotide tiling arrays


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Documentation for package `tilingArray' version 1.10.0

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tilingArray-package tilingArray package overview
breakpoints.breakpointsPretend Accessor methods for breakpointsPretend objects - not to be called by the user.
comparisonPlot Plot a vertical layout of panels for the comparison of different along-chromosome profiles.
confint The class segmentation represents a segmentation result.
confint,segmentation-method The class segmentation represents a segmentation result.
costMatrix Segmentation cost matrix
findSegments Fit a piecewise constant curve to a sequence of numbers - OBSOLETE, please use function segment instead.
logLik The class segmentation represents a segmentation result.
logLik,segmentation-method The class segmentation represents a segmentation result.
normalizeByReference Probe-specific normalization of hybridization intensities from a short-oligo microarray
otherStrand Return the name of the opposite strand
plot,segmentation-method The class segmentation represents a segmentation result.
plotAlongChrom Plot signals and segmentation along a chromosomal region
posMin Find the smallest positive number in a vector
readCel2eSet Read celfiles into an eSet object.
residuals.breakpointsPretend Accessor methods for breakpointsPretend objects - not to be called by the user.
sampleStep Sampling of ascending numbers to ensure minimal spacing.
segment Fit a piecewise constant curve: segmentation by dynamic programming
segmentation-class The class segmentation represents a segmentation result.
show,segmentation-method The class segmentation represents a segmentation result.
tilingArray tilingArray package overview