stamNode-class {stam} | R Documentation |
Objects of this class and its subclasses represent single nodes in a classifier net as it is used by structured analysis of microarray data.
Objects can be created by calls of the form new("stamNode", ID, supNode)
.
ID
:"character"
, holds the GO identifier as
character stringcategory
:"character"
, represents the GO
ontology the node belongs (MF: molecular function, BP: biological process, CC:
cellular component).replacedParents
:"character"
, holds all GO
identifiers of nodes which have been removed, because the had only one child.supNode
:"logical"
, indicates whether the nodes
has been added to avoid nodes which have both directly annotated genes as well as
children in the classifier graphsignature(x = "stamNode")
: returns the identifiers of the
direct children of node x in the Gene Ontology.signature(x = "character")
: returns the identifiers of
the direct children of the node with identifier x in the Gene Ontology.signature(x = "stamNode")
: returns the identifiers of the
direct parents of node x in the Gene Ontology.signature(x = "character")
: returns the identifiers of the
direct parents of the node with identifier x in the Gene Ontology.signature(x = "stamNode")
: returns the GO term represented by
node x.signature(x = "character")
: returns the GO term represented by
the node with identifier x.signature(x = "stamNode")
print information on the node.signature(x = "stamNode")
generate HTML information on the
node.Claudio Lottaz
stamLeaf-class
, stamINode-class