args.sam | Help files or argument list for SAM-specific methods |
delta.plot | Delta Plots |
ebam | Empirical Bayes Analysis of Microarrays |
ebam.wilc | Empirical Bayes Analysis using Wilcoxon Rank Sums |
find.a0 | Computation of the Fudge Factor |
fudge2 | Fudge Factor |
help.sam | Help files or argument list for SAM-specific methods |
identify,SAM-method | Class SAM |
link.genes | Links for a list of genes |
link.siggenes | Links for a SAM object |
list.siggenes | List of the significant genes |
na.handling | Handling of Missing Values |
na.replace.cont | Replacing of Missing Values in Continuous Data |
na.replace.dist | Handling of Missing Values in Categorical Data |
pi0.est | Estimation of the prior probability |
plot,SAM-method | Class SAM |
plotArguments | SAM Plot |
print,SAM-method | Class SAM |
print,sumSAM-method | Class sumSAM |
qvalue.cal | Computation of the q-value |
SAM | Class SAM |
sam | Significance Analysis of Microarray |
SAM-class | Class SAM |
sam.dstat | SAM Analysis Using a Modified t-statistic |
sam.plot2 | SAM Plot |
sam.snp | SAM Analysis for Categorical Data |
sam.wilc | SAM Analysis Using Wilcoxon Rank Statistics |
sam2excel | CSV file of a SAM object |
sam2html | HTML page for a SAM object |
show,SAM-method | Class SAM |
show,sumSAM-method | Class sumSAM |
summary,SAM-method | Class SAM |
sumSAM-class | Class sumSAM |