clusterVisualNone-class {goCluster}R Documentation

Class "clusterVisualNone", a placeholder for the goCluster visualization methods

Description

The class can be used to avoid specifying a visualization method when performing an analysis with goCluster.

Slots

All slots are described in the documentation for the clusterModule-class.

Extends

Class "clusterVisual", directly. Class "clusterModule", by class "clusterVisual".

Methods

config
signature(object = "clusterVisualNone"): The class has no parameters. This method does not result in any action.
execute
signature(object = "clusterVisualNone"): The class has no executable function defined and will do nothing.
setup
signature(object = "clusterVisualNone"): The class has no parameters. This method returns an empty list.
setup<-
signature(object = "clusterVisualNone"): The class has no parameters. This method does not result in any action.
reset
signature(object = "clusterVisualNone"): resets the results of this class so that the analysis can be run again.
display
signature(object = "clusterVisualNone"): generates the actual graphic for this object.
print
signature(x = "clusterVisualNone"): prints generic information about the object.

Author(s)

Gunnar Wrobel, work@gunnarwrobel.de, http://www.gunnarwrobel.de.

See Also

goCluster-class, clusterModule-class, clusterVisual-class

Examples


set.seed(1000)

data(benomylsetupsmall)

a <- new("goCluster")

## This will result in an object without visualization
execute(a) <- benomylsetupsmall

## We can choose and add the visualization method afterwards

## Create the visualization method
b <- new("clusterVisualHeatmap")

## Assign the new method to the old goCluster object
a@visu <- b

## Prepare the visualization
a@visu <- execute(a@visu, a)

if(interactive()){
## This example can only be run in an interactive mode

## This plot shows only four genes since the loaded dataset
## has been reduced to only 100 genes. Try the same with
## the full dataset
display(a, selection = "GO:0003735")
}

[Package goCluster version 1.6.0 Index]