clusterSignif-class {goCluster}R Documentation

Class "clusterSignif"

Description

An abstract class that provides a framework for the significance analysis methods provided by goCluster.

Details

This class provides a wrapper for the selection algorithms employed by goCluster. The class provides a slot to hold the class that is being used for the statistical analysis and a slot for the selected annotation terms.

Slots

statset:
Object of class "list", this slot contains the statistical values that the class will use in order to decide which annotation terms are interesting or not. This can be a simple copy of the underlying clusterStatistic object but it can as well hold corrected value depending on the function of this class.
selection:
Object of class "list", this is the list of elements that were selected by the algorithm as being interesting.
stat:
Object of class "clusterStatistic", the statistical method that is used to identify interesting gene groups.

Additional slots are described in the documentation for the clusterModule-class.

Extends

Class "clusterModule", directly.

Methods

config
signature(object = "clusterModule"): This function does nothing since this is an abstract class.
setup
signature(object = "clusterModule"): This function returns an empty list since this is an abstract class.
setup<-
signature(object = "clusterModule"): This function does nothing since this is an abstract class.
execute
signature(object = "clusterModule"): This function does nothing since this is an abstract class.
execute<-
signature(object = "clusterModule"): This function does nothing since this is an abstract class.
reset
signature(object = "clusterModule"): This function resets the clusterset-slot to an empty list.
print
signature(object = "clusterModule"): This function does nothing since this is an abstract class.

Author(s)

Gunnar Wrobel, work@gunnarwrobel.de, http://www.gunnarwrobel.de.

See Also

goCluster-class, clusterModule-class, clusterSignifBase-class, clusterSignifBonferroni-class, clusterSignifFDR-class


[Package goCluster version 1.6.0 Index]