clusterStatisticHyper-class {goCluster}R Documentation

Class "clusterStatisticHyper" provides the hypergeometric distribution for the goCluster analysis.

Description

This class provides the hypergeometric distribution for goCluster and can be used to identify gene groups that show a significant enrichement of similar annotation terms.

Details

The class provides a wrapper around the evalClusterHyper function. Please read the corresponding documentation for further details.

Slots

All slots are described in the documentation of the clusterStatistic-class and clusterModule-class.

Extends

Class "clusterStatistic", directly. Class "clusterModule", by class "clusterStatistic".

Methods

config
signature(object = "clusterStatisticHyper"): interactive setup of the class. There are no options that you can set on this class.
setup
signature(object = "clusterStatisticHyper"): returns the configuration of the object as a list. Since there are no options to this class, this is always an empty list.
setup<-
signature(object = "clusterStatisticHyper"): non-interactive setup of the class. Not necessary since this class has no options.
execute
signature(object = "clusterStatisticHyper"): runs the statistical analysis on the clustering results provided by the parent class.
reset
signature(object = "clusterStatisticHyper"): resets the results of this class so that the analysis can be run again.
print
signature(object = "clusterStatisticHyper"): This function prints some basic information about the content of this object. If the object has been executed, it will show the number clusters that have been analyzed.

Author(s)

Gunnar Wrobel, work@gunnarwrobel.de, http://www.gunnarwrobel.de.

See Also

evalClusterHyper, goCluster-class, clusterModule-class, clusterStatistic-class


[Package goCluster version 1.6.0 Index]