annotation.vandeVijver |
Some selected annotations for the breast cancer data from Rosetta Inpharmatics LLC and
Netherlands Cancer Institute, to serve as example data in the globaltest package. |
checkerboard |
Checkerboard plot for Global Test |
coefficients,mlogit-method |
Multinomial Logistic Regression |
combine |
Class "gt.result" for results of the function globaltest |
combine,gt.result-method |
Class "gt.result" for results of the function globaltest |
fit |
Class "gt.result" for results of the function globaltest |
fit,gt.result-method |
Class "gt.result" for results of the function globaltest |
fitted.values,mlogit-method |
Multinomial Logistic Regression |
geneplot |
Gene Plot for Global Test |
globaltest |
Global Test |
gt.barplot |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
gt.barplot-class |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
gt.multtest |
Correct globaltest results for multiple testing |
gt.result |
Class "gt.result" for results of the function globaltest |
gt.result-class |
Class "gt.result" for results of the function globaltest |
hist,gt.result-method |
Class "gt.result" for results of the function globaltest |
length,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
length,gt.result-method |
Class "gt.result" for results of the function globaltest |
mlogit |
Multinomial Logistic Regression |
mlogit-class |
Multinomial Logistic Regression |
names,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
names,gt.result-method |
Class "gt.result" for results of the function globaltest |
names<-,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
names<-,gt.result-method |
Class "gt.result" for results of the function globaltest |
p.value |
Class "gt.result" for results of the function globaltest |
p.value,gt.result-method |
Class "gt.result" for results of the function globaltest |
permutations |
Permutations version of the Global Test |
plot,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
regressionplot |
Regression Plot for Global Test |
residuals,mlogit-method |
Multinomial Logistic Regression |
result |
Class "gt.result" for results of the function globaltest |
result,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
result,gt.result-method |
Class "gt.result" for results of the function globaltest |
sampleplot |
Sample Plot for Global Test |
sampling |
Sampling random 'pathways' for the Global Test |
scale,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
show,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
show,gt.result-method |
Class "gt.result" for results of the function globaltest |
show,mlogit-method |
Multinomial Logistic Regression |
size |
Class "gt.result" for results of the function globaltest |
size,gt.result-method |
Class "gt.result" for results of the function globaltest |
sort,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
sort,gt.result-method |
Class "gt.result" for results of the function globaltest |
summary,mlogit-method |
Multinomial Logistic Regression |
vandeVijver |
A subset of the Breast cancer data from Rosetta Inpharmatics LLC and
Netherlands Cancer Institute. |
z.score |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
z.score,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
z.score,gt.result-method |
Class "gt.result" for results of the function globaltest |
[,gt.barplot-method |
Class "gt.barplot" for results of the functions geneplot and sampleplot |
[,gt.result-method |
Class "gt.result" for results of the function globaltest |