write.dataSet {genArise} | R Documentation |
Write dataSet
Description
Write the values for observations of an object of DataSet class in an
output file. This values are writen in columns with the follow order:
Cy3, Cy5, Cy3 Background, Cy5 Background, Ids and finally the Zscore
value. By default this output file has no header.
Usage
write.dataSet(dataSet.spot, fileName, quote
= FALSE, col.names = FALSE, row.names = FALSE,
Zscore.min = NULL, Zscore.max = NULL, sep = "\t")
Arguments
dataSet.spot |
An object of DataSet class |
fileName |
The name of the output file where the data will be
writen. This argument must be quoted. |
quote |
If quote = TRUE, all values in the file will be quoted. |
col.names |
If col.names = TRUE, an integer is writen in every
column as header. By default col.names = FALSE. |
row.names |
If row.names = TRUE will be an extra column that
numerates every rows in the file. |
Zscore.min |
The lower value in a range, if Zscore.min = NULL then
the file will contain all values bellow Zscore.max |
Zscore.max |
The greater value in a range, if Zscore.max = NULL
then file will be contain all values above Zscore.min. Both values,
Zscore.min and Zscore.max can not be NULL |
sep |
Character to separate the columns in file. By default sep
= "t". |
Examples
data(WT.dataset)
write.dataSet(dataSet.spot = WT.dataset, fileName = "Example.csv", Zscore.min = 1,
Zscore.max = 1.5, sep = "\t")
[Package
genArise version 1.8.0
Index]