copa-package {copa}R Documentation

copa - A package to compute 'Cancer Outlier Profile Analysis'

Description

This package is used to compute copa scores, p-values based on permutation, and plots of paired genes.

Details

Package: copa
Type: Package
Version: 0.1.0
Date: 2006-01-26
License: LLGPL

There are two main functions; copa, which is used to compute the COPA score for a set of microarrays, and permCopa, which is used to calculate permutation based p-values and estimate false discovery rate (FDR).

Author(s)

James W. MacDonald

Maintainer: James W. MacDonald <jmacdon@med.umich.edu>

References

Tomlins, SA, et al. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science. 2005 Oct 28;310(5748):644-8.


[Package copa version 1.0.1 Index]