vern {bim} | R Documentation |
Eight week vernalization data for Brassica napus
Description
Contains genotypes and phenotypes for 8-week vernalization study used in
Satagopan et al. (1996).
Usage
data(vern)
data(verngeo.bim)
data(vernpois.bim)
Format
See read.cross
for format of
vern
. verngeo.bim
and vernpois.bim
created by
setting prior.nqtl
to "geometric"
and "poisson"
, respectively.
Source
Thomas C. Osborn (mailto:tcosborn@facstaff.wisc.edu), Department of Agronomy,
UW-Madison.
References
http://www.stat.wisc.edu/~yandell/qtl/data/osborn/Bnapus
Ferreira ME, Satagopan J, Yandell BS, Williams PH, Osborn TC
(1995) Mapping loci controlling vernalization requirement and
flowering time in Brassica napus. Theor Appl Genet
90: 727-732. [original source and analysis]
Kole C, Thorman CE, Karlsson BH, Palta JP, Gaffney P, Yandell
BS, Osborn TC (2001)
Comparative mapping of loci controlling winter survival and
related traits in oilseed Brassica rapa and B. napus.
Molecular Breeding 1: 329-339. [refined map and reanalysis]
JM Satagopan, BS Yandell, MA Newton and TC Osborn (1996)
Markov chain Monte Carlo approach to detect polygene loci
for complex traits. Genetics 144: 805-816.
http://www.genetics.org/cgi/content/abstract/144/2/805
[first MCMC for experimental crosses; analysis of B. napus N2=LG9; see
vern
data]
See Also
read.cross
, plot.bim
,
run.bmapqtl
, bmapqtl.options
Examples
data(vern)
data(verngeo.bim)
data(vernpois.bim)
## or use run.bmapqtl to create bim objects:
## Not run:
bmapqtl.options(prior.nqtl="geometric")
verngeo.bim = run.bmapqtl(vern)
bmapqtl.options(prior.nqtl="poisson")
vernpois.bim = run.bmapqtl(vern)
## End(Not run)
[Package
bim version 1.4.0
Index]