homoData-class {annotate} | R Documentation |
A class to present data for HomologGene data of a matching sequence
Objects can be created by calls of the form new("homoData", ...)
.
homoOrg
:"character"
the
scientific name of the organism of interesthomoLL
:"numeric"
the LocusLink
id of the gene of interesthomoType
:"character"
the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationshiphomoPS
:"numeric"
percent
similarity valuehomoURL
:"character"
the URL for
curated homology relationshiphomoACC
:"character"
the
accession numberhomoHGID
:"numeric"
the
internal HomologGeneIDsignature(object = "homoData")
: the get function for
slot homoPS
signature(object = "homoData")
: the get function
for slot homoLL
signature(object = "homoData")
: the get function
for slot homoOrg
signature(object = "homoData")
: the get function
for slot homoType
signature(object = "homoData")
: the get function
for slot homoURL
signature(object = "homoData")
: the get function
for slot homoACC
signature(object = "homoHGID")
: the get
function for slot homoHGID
This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinfomatics functionalities throug R
Jianhua Zhang
ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README
new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins", homoType = "B", homoURL = "", homoHGID = 12345)