read.affybatch2 {affxparser}R Documentation

Read CEL files into an Affybatch

Description

Read CEL files into an Affybatch. An implemetation build on the affxparser package.

Usage

read.affybatch2(..., filenames = character(0),
                phenoData = new("phenoData"),
                description = NULL, notes = "",
                compress = getOption("BioC")$affy$compress.cel,
                rm.mask = FALSE, rm.outliers = FALSE,
                rm.extra = FALSE, verbose = FALSE)

Arguments

... file names separated by comma.
filenames file names in a character vector.
phenoData a phenoData object
description a MIAME object
notes notes.
compress Not currently supported.
rm.mask Not currently supported.
rm.outliers Not currently supported.
rm.extra Not currently supported.
verbose verbosity flag.

Details

Value

An AffyBatch object.

Author(s)

The author of the original read.affybatch function: Ben Bolstad, bolstad@stat.berkeley.edu as well as James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen khansen@stat.berkeley.edu

See Also

read.affybatch in affy as well as readCelIntensities and readCel.

Examples






[Package affxparser version 1.4.1 Index]