affxparser-package | Package affxparser |
affxparser | Package affxparser |
affxparserInfo | Overview of the Affxparser package. |
applyCdfGroups | Applies a function over the groups in a CDF structure |
cdfAddBaseMmCounts | Adds the number of allele A and allele B mismatching nucleotides of the probes in a CDF structure |
cdfAddProbeOffsets | Adds probe offsets to the groups in a CDF structure |
cdfGetFields | Gets a subset of groups fields in a CDF structure |
cdfGtypeCelToPQ | Function to immitate Affymetrix' gtype_cel_to_pq software |
cdfMergeStrands | Function to join CDF groups with the same names |
cdfMergeToQuartets | Function to re-arrange CDF groups values in quartets |
cellindexmaps | Cell index maps for reading and writing |
cellxy | Cell coordinates and cell indices |
findCdf | Search for CDF files in multiple directories |
findFiles | Finds one or several files in multiple directories |
invertMap | Inverts a read or a write map |
read.affybatch2 | Read CEL files into an Affybatch |
readCdf | Parsing a CDF file using Affymetrix Fusion SDK |
readCdfCellIndices | Reads cell indices of units (probesets) in an Affymetrix CDF file |
readCdfGroupNames | Reads group names of a set units (probesets) in an Affymetrix CDF file |
readCdfHeader | Reads the header associated with an Affymetrix CDF file |
readCdfIsPm | Checks if cells in a CDF file are perfect-match probes or not |
readCdfNbrOfCellsPerUnitGroup | Gets the number of cells (probes) that each group of each unit in a CDF file |
readCdfUnitNames | Reads unit (probeset) names from an Affymetrix CDF file |
readCdfUnits | Reads units (probesets) from an Affymetrix CDF file |
readCdfUnitsWriteMap | Generates an Affymetrix cell-index write map from a CDF file |
readCel | Reads an Affymetrix CEL file |
readCelHeader | Parsing the header of an Affymetrix CEL file |
readCelIntensities | Reads the intensities contained in several Affymetrix CEL files |
readCelRectangle | Reads a spatial subset of probe-level data from Affymetrix CEL files |
readCelUnits | Reads probe-level data ordered as units (probesets) from one or several Affymetrix CEL files |