pvadjust {LMGene} | R Documentation |
This function converts the given raw p-values into the FDR adjusted p-values using R package 'multtest'.
pvadjust(pvlist)
pvlist |
A list containing raw p-values |
pvlist
is the output from genediff
containing p-values from
gene-specific MSE's and posterior MSE's.
pvlist2 |
A list with the raw p-values and the newly computed FDR adjusted p-values |
David Rocke and Geun-Cheol Lee
David M. Rocke (2004), Design and analysis of experiments with high throughput biological assay data, Seminars in Cell & Developmental Biology, 15, 703-713.
http://www.idav.ucdavis.edu/~dmrocke/
#library library(Biobase) library(LMGene) #data data(Smpd) data(vlist) LoggedSmpd0<-neweS(lnorm(log(Smpd)),vlist) pvlist<-genediff(LoggedSmpd0) pvlist$Posterior[1:5,] apvlist<-pvadjust(pvlist) names(apvlist) apvlist$Posterior.FDR[1:5,]