LMGene Software for Date Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays


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Documentation for package `LMGene' version 1.0.0

User Guides and Package Vignettes

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Help Pages

arrplot1 Function to calculate relative mean squares
arrplotd Function for plotting a smoothed histogram
arrplote Function for plotting a cumulative frequency distribution
beams Beam search rountine for finding the optimal parameters
dplot Plotting smoothed histogram
dplote Plotting cumulative frequency distribution
genediff Raw p-value calculation function
glog Generalized log transformation function
jggrad2 Generating Jacobian-corrected data
jglog Glog
LMGene LMGene main function
lnorm Lowess normalization function
mlm2lm Linear Model converting function
msa Relative mean square calculation function
msecalc MSE calculation function
neweS Coercing to exprSet function
norm Additive normalization function
pvadjust P-value adjusting function
rgplot Plotting density function
rowaov Gene by gene anova functioin
rowlist Gene name listing function
Smpd Sample array data for LMGene package
Smpd0 Sample array data for LMGene
tranest Glog transformation parameter estimation function
tranest2 Glog transformation parameter estimation function 2
vlist Sample experimental data for LMGene package