arrplot1 {LMGene} | R Documentation |
Calculate relative mean squares of all considered factors for all genes. The obtained relative mean square values are used for plotting the smoothed histogram and the cumulative frequency distributioin.
arrplot1(eS)
eS |
Array data. must be a exprSet type |
The input argument, eS, must be exprSet type from Biobase package.
If you have a matrix data and information about the considered factors,
then you can use neweS
to conver the data into exprSet.
Please see neweS
in more detail.
resmat |
Matrix containing the relative mean square values of all factors considered including Error for all genes |
David Rocke and Geun-Cheol Lee
http://www.idav.ucdavis.edu/~dmrocke/
arrplotd
, arrplote
, mlm2lm
, msa
#library library(Biobase) library(LMGene) #data data(Smpd0) # RMS<-arrplot1(Smpd0) RMS[,1:5]