arrplot1 {LMGene}R Documentation

Function to calculate relative mean squares

Description

Calculate relative mean squares of all considered factors for all genes. The obtained relative mean square values are used for plotting the smoothed histogram and the cumulative frequency distributioin.

Usage

arrplot1(eS)

Arguments

eS Array data. must be a exprSet type

Details

The input argument, eS, must be exprSet type from Biobase package. If you have a matrix data and information about the considered factors, then you can use neweS to conver the data into exprSet. Please see neweS in more detail.

Value

resmat Matrix containing the relative mean square values of all factors considered including Error for all genes

Author(s)

David Rocke and Geun-Cheol Lee

References

http://www.idav.ucdavis.edu/~dmrocke/

See Also

arrplotd, arrplote, mlm2lm, msa

Examples


#library
library(Biobase)
library(LMGene)

#data
data(Smpd0)

#
RMS<-arrplot1(Smpd0)
RMS[,1:5]

[Package LMGene version 1.0.0 Index]