arrplot1 |
Function to calculate relative mean squares |
arrplotd |
Function for plotting a smoothed histogram |
arrplote |
Function for plotting a cumulative frequency distribution |
beams |
Beam search rountine for finding the optimal parameters
|
dplot |
Plotting smoothed histogram |
dplote |
Plotting cumulative frequency distribution
|
genediff |
Raw p-value calculation function
|
glog |
Generalized log transformation function
|
jggrad2 |
Generating Jacobian-corrected data
|
jglog |
Glog |
LMGene |
LMGene main function |
lnorm |
Lowess normalization function |
mlm2lm |
Linear Model converting function
|
msa |
Relative mean square calculation function
|
msecalc |
MSE calculation function
|
neweS |
Coercing to exprSet function
|
norm |
Additive normalization function
|
pvadjust |
P-value adjusting function
|
rgplot |
Plotting density function
|
rowaov |
Gene by gene anova functioin
|
rowlist |
Gene name listing function |
Smpd |
Sample array data for LMGene package |
Smpd0 |
Sample array data for LMGene |
tranest |
Glog transformation parameter estimation function
|
tranest2 |
Glog transformation parameter estimation function 2
|
vlist |
Sample experimental data for LMGene package |