Client-side SOAP access KEGG


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Documentation for package `KEGGSOAP' version 1.6.0

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color.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with a given set of genes marked
get.best.best.neighbors.by.gene Client-side interface to obtain the name of genes that are homologous to a given gene
get.best.neighbors.by.gene Client-side interface to obtain the name of genes that are homologous to a given gene
get.compounds.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
get.enzymes.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
get.genes.by.motifs Client-side interface to obtain the name of genes that contain the motifs represented by a set of motif ids
get.genes.by.organism Client-side interface to obtain the KEGG ids for all the genes of a given organism
get.genes.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
get.motifs.by.gene Client-side interface to obtain the name of genes that are homologous to a given gene
get.paralogs.by.gene Client-side interface to obtain data for paralogous genes
get.pathways.by.compounds Client-side interface to obtain the KEGG pathway ids
get.pathways.by.enzymes Client-side interface to obtain the KEGG pathway ids
get.pathways.by.genes Client-side interface to obtain the KEGG pathway ids
get.pathways.by.reactions Client-side interface to obtain the KEGG pathway ids
get.reactions.by.pathway Client-side interface to obtain the KEGG ids for genes/enzymes/compounds/reactions that are involved in the interactions in a given pathway
getBestNeighbors Client-side interface to obtain the name of genes that are homologous to a given gene
KEGGaction Definitions of objects used by other functions to access KESS SOAP service
KEGGserver Definitions of objects used by other functions to access KESS SOAP service
KEGGxmlns Definitions of objects used by other functions to access KESS SOAP service
list.databases Client-side interface to obtain the names of organisms supported by KEGG databases
list.organisms Client-side interface to obtain the names of organisms supported by KEGG databases
list.pathways Client-side interface to obtain the names of organisms supported by KEGG databases
mark.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with a given set of genes marked