GeneCategoryHyperGeoTestResult-class {Category} | R Documentation |
This class represents the results of a test for overrepresentation of
categories among genes in a selected gene set based upon the
Hypergeometric distribution. The geneCategoryHyperGeoTest
generic function returns an instance of the
GeneCategoryHyperGeoTestResult
class.
Objects can be created by calls of the form new("GeneCategoryHyperGeoTestResult", ...)
.
pvalues
:"numeric"
vector: the ordered
p-values for each category term tested.geneCounts
:"integer"
vector: for each
category term tested, the number of genes from the gene set that
are annotated at the term.universeCounts
:"integer"
vector: for
each category term tested, the number of genes from the gene
universe that are annotated at the term.universeMappedCount
:"integer"
vector of length
one: The size of the gene universe set.geneMappedCount
:"integer"
vector of length
one: The size of the selected gene set.annotation
:geneIds
:"ANY"
: the input
vector of gene identifiers passed to the testing method.testName
:signature(object =
"GeneCategoryHyperGeoTestResult")
: Display a short summary of the resultS. Falcon
geneCategoryHyperGeoTest
phyper