universeBuilder {Category}R Documentation

Return a vector of gene identifiers with category annotations

Description

Return all gene ids that are annotated at one or more terms in the category. If the universeGeneIds slot of p has length greater than zero, then the intersection of the gene ids specified in that slot and the normal return value is given.

Usage

universeBuilder(p)

Arguments

p A subclass of GeneCategoryHyperGeoTestParams-class

Details

End users should not call this directly. This method gets called from geneCategoryHyperGeoTest. To add support for a new category, a new method for this generic must be defined. Its signature should match a subclass of GeneCategoryHyperGeoTestParams-class appropriate for the new category.

Value

A vector of gene identifiers.

Author(s)

S. Falcon

See Also

geneCategoryHyperGeoTest GeneCategoryHyperGeoTestParams-class


[Package Category version 1.4.1 Index]