A B C D F I L M N P R S T V W Y misc
!=,ANY,BString-method | The BString, DNAString and RNAString classes |
!=,ANY,BStringViews-method | The BStringViews class |
!=,bbuf,bbuf-method | Biostrings internals |
!=,BString,ANY-method | The BString, DNAString and RNAString classes |
!=,BString,BStringViews-method | The BStringViews class |
!=,BStringViews,ANY-method | The BStringViews class |
!=,BStringViews,BString-method | The BStringViews class |
!=,ibuf,ibuf-method | Biostrings internals |
==,ANY,BString-method | The BString, DNAString and RNAString classes |
==,ANY,BStringViews-method | The BStringViews class |
==,bbuf,bbuf-method | Biostrings internals |
==,BString,ANY-method | The BString, DNAString and RNAString classes |
==,BString,BStringViews-method | The BStringViews class |
==,BStringViews,ANY-method | The BStringViews class |
==,BStringViews,BString-method | The BStringViews class |
==,ibuf,ibuf-method | Biostrings internals |
adjacentViews | The BStringViews class |
alignScore | quadratic-space, simple gap implementation of Needleman-Wunsch global alignment algorithm |
alphabetFrequency | Function to calculate the frequency of letters in a biological sequence |
alphabetFrequency,BString-method | Function to calculate the frequency of letters in a biological sequence |
alphabetFrequency,BStringViews-method | Function to calculate the frequency of letters in a biological sequence |
alphabetFrequency,DNAString-method | Function to calculate the frequency of letters in a biological sequence |
alphabetFrequency,RNAString-method | Function to calculate the frequency of letters in a biological sequence |
as.character,BString-method | The BString, DNAString and RNAString classes |
as.character,BStringViews-method | The BStringViews class |
as.list,BStringViews-method | The BStringViews class |
as.matrix,BStringViews-method | The BStringViews class |
bbuf | Biostrings internals |
bbuf-class | Biostrings internals |
blosum50 | scoring matrix for codon substitution in protein alignments |
BString | The BString, DNAString and RNAString classes |
BString-class | The BString, DNAString and RNAString classes |
BStringCodec | Biostrings internals |
BStringCodec-class | Biostrings internals |
BStringViews | The BStringViews class |
BStringViews,BString-method | The BStringViews class |
BStringViews,BStringViews-method | The BStringViews class |
BStringViews,file-method | The BStringViews class |
BStringViews-class | The BStringViews class |
cbuf | Biostrings internals |
cbuf-class | Biostrings internals |
class:bbuf | Biostrings internals |
class:BString | The BString, DNAString and RNAString classes |
class:BStringCodec | Biostrings internals |
class:BStringViews | The BStringViews class |
class:cbuf | Biostrings internals |
class:DNAString | The BString, DNAString and RNAString classes |
class:ibuf | Biostrings internals |
class:RNAString | The BString, DNAString and RNAString classes |
complement | Sequence reversing and complementing |
complement,BStringViews-method | Sequence reversing and complementing |
complement,DNAString-method | Sequence reversing and complementing |
countPattern | String searching functions |
countPattern,ANY,BString-method | String searching functions |
countPattern,ANY,BStringViews-method | String searching functions |
countPattern,ANY,character-method | String searching functions |
debug_bbuf | Biostrings internals |
debug_shiftor | Biostrings internals |
debug_utils | Biostrings internals |
desc | The BStringViews class |
desc,BStringViews-method | The BStringViews class |
DNAString | The BString, DNAString and RNAString classes |
DNAString-class | The BString, DNAString and RNAString classes |
first | The BStringViews class |
first,BStringViews-method | The BStringViews class |
ibuf | Biostrings internals |
ibuf-class | Biostrings internals |
initialize,bbuf-method | Biostrings internals |
initialize,BString-method | The BString, DNAString and RNAString classes |
initialize,BStringCodec-method | Biostrings internals |
initialize,BStringViews-method | The BStringViews class |
initialize,DNAString-method | The BString, DNAString and RNAString classes |
initialize,ibuf-method | Biostrings internals |
initialize,RNAString-method | The BString, DNAString and RNAString classes |
last | The BStringViews class |
last,BStringViews-method | The BStringViews class |
length,bbuf-method | Biostrings internals |
length,BString-method | The BString, DNAString and RNAString classes |
length,BStringViews-method | The BStringViews class |
length,ibuf-method | Biostrings internals |
letter | The BString, DNAString and RNAString classes |
letter,BString-method | The BString, DNAString and RNAString classes |
matchDNAPattern | String searching functions |
matchPattern | String searching functions |
matchPattern,ANY,BString-method | String searching functions |
matchPattern,ANY,BStringViews-method | String searching functions |
matchPattern,ANY,character-method | String searching functions |
mismatch | String searching functions |
mismatch,ANY,BStringViews-method | String searching functions |
nchar,BString-method | The BString, DNAString and RNAString classes |
nchar,BStringViews-method | The BStringViews class |
needwunsQS | quadratic-space, simple gap implementation of Needleman-Wunsch global alignment algorithm |
needwunsQS,BString,character-method | quadratic-space, simple gap implementation of Needleman-Wunsch global alignment algorithm |
needwunsQS,character,BString-method | quadratic-space, simple gap implementation of Needleman-Wunsch global alignment algorithm |
needwunsQS,character,character-method | quadratic-space, simple gap implementation of Needleman-Wunsch global alignment algorithm |
print.needwunsQS | quadratic-space, simple gap implementation of Needleman-Wunsch global alignment algorithm |
readFASTA | A function to read FASTA formatted files |
reverse | Sequence reversing and complementing |
reverse,BString-method | Sequence reversing and complementing |
reverse,BStringViews-method | Sequence reversing and complementing |
reverseComplement | Sequence reversing and complementing |
reverseComplement,BStringViews-method | Sequence reversing and complementing |
reverseComplement,DNAString-method | Sequence reversing and complementing |
RNAString | The BString, DNAString and RNAString classes |
RNAString-class | The BString, DNAString and RNAString classes |
show,bbuf-method | Biostrings internals |
show,BString-method | The BString, DNAString and RNAString classes |
show,BStringViews-method | The BStringViews class |
show,cbuf-method | Biostrings internals |
show,externalptr-method | Biostrings internals |
show,ibuf-method | Biostrings internals |
subBString | The BString, DNAString and RNAString classes |
subBString,BString-method | The BString, DNAString and RNAString classes |
subject | The BStringViews class |
subject,BStringViews-method | The BStringViews class |
toString,bbuf-method | Biostrings internals |
toString,BString-method | The BString, DNAString and RNAString classes |
toString,BStringViews-method | The BStringViews class |
views | The BStringViews class |
width | The BStringViews class |
width,BStringViews-method | The BStringViews class |
yeastSEQCHR1 | An annotation data file for CHR1 in the yeastSEQ package |
[,bbuf-method | Biostrings internals |
[,BString-method | The BString, DNAString and RNAString classes |
[,BStringViews-method | The BStringViews class |
[,cbuf-method | Biostrings internals |
[,ibuf-method | Biostrings internals |
[<-,bbuf-method | Biostrings internals |
[<-,BString-method | The BString, DNAString and RNAString classes |
[<-,BStringViews-method | The BStringViews class |
[<-,ibuf-method | Biostrings internals |
[[,BStringViews-method | The BStringViews class |
[[<-,BStringViews-method | The BStringViews class |