getPubDataGo {AnnBuilder}R Documentation

Functions to download public domain annotation data sources

Description

These functions are intended to help create a local mirror of public domain annotation data sources. They all depend on having wget available.

Usage

getPubDataHomoloGene(baseUrl, passive)
getPubDataLocusLink(baseUrl, passive)
getPubDataUniGene(baseUrl, passive)
getPubDataEntrezGene(baseUrl, passive)
getPubDataGoldenPath(baseUrl, passive)
getPubDataGo(baseUrl, passive)
getPubDataYeastGenome(baseUrl, passive)
getPubDataKegg(baseUrl, passive)

Arguments

baseUrl The URL. Note that for some sources this is a directory and for others it fully specifies a file we want to have available.
passive logical. If TRUE, pass the -passive-ftp flag to wget

Author(s)

Seth Falcon <sfalcon@fhcrc.org>


[Package AnnBuilder version 1.10.5 Index]