EG-class {AnnBuilder} | R Documentation |
Entrez Gene contains data that were previously provided by LocusLink. The EG class represents objects that contains the needed information for gettting and processing the data
Objects can be created by calls of the form new("EG", ...)
.
A constructor (EG
is available and should be used to
instantiate objects of EG
accession
:"character"
for the
name of the file containing mappings between GenBank accession
numbers and Gene idsinfo
:"character"
for the name
of the file containing mappings between Gene ids and symbol,
chromosome number for genes, cytoband information, and gene namego
:"character"
for the name of
the file containing mappings between Gene ids and GO informationpubmed
:"character"
for the
name of the file containing mappings between Gene ids and PubMed idsrefseq
:"character"
for the
name of the file containing mappings between Gene ids and RefSeq idsunigene
:"character"
for the
name of the file containing the mappings between Gene ids and
UniGene idsmim
:"character"
for the name
of the file containing mappings between Gene ids and OMIM idssrcUrl
:"character"
for the
root URL where the aforementioned files resideparser
:"character"
for the
name of a Perl parser that will be used to parse the source filebaseFile
:"character"
for the
name of the base file that contains mappings between probe ids and
a public database ids that will be used to map probe ids to
annotation data contained in a source filebuilt
:"character"
for build
information of the source filefromWeb
:"logical"
for
inficating whether the source file should be accessed through the
web or locally
Class "pubRepo"
, directly.
signature(object = "EG")
: A method to parse
a source file using a specified parserJianhua Zhang