pfamBuilder {AnnBuilder}R Documentation

Building Functions for the Data Package of Pfam Database

Description

These functions builds a data package for Pfam database

Usage

pfamBuilder(pkgName="PFAM", pkgPath, version, author,
            fromWeb=TRUE, lazyLoad=TRUE, useTmp=FALSE, sqlFile=NULL)

Arguments

pkgName pkgName a character string for the name of the data package to be built. The default is "PFAM"
pkgPath pkgPath a character string for the directory where the data package to be built will be stored
version version a character string for the version number of the data package to be built
author author a named vector of two character strings with a name element for the name and an address element of email address of the maintainer of the data package
fromWeb fromWeb a boolean to indicate whether the data from GO should be downloaded from the web or read locally. The url for GO should be the file name of a local file if fromWeb is FALSE. For windows users, the data file from GO should be downloaded/unzipped manually and set the url for GO to be the name of the local file
lazyLoad lazyLoad a boolean indicating whether a lazy load database will be created
useTmp useTmp a boolean. If TREU, the sqlite file will be saved to tempdir. Otherwise, it will be saved to the data subdirectory of the package. The default is FALSE.
sqlFile sqlFile a character string to indicate the full path of the local SQL file. The default is NULL so that the SQL file will be downloaded from the Pfam website

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/

Examples

# Not provided. 

[Package AnnBuilder version 1.10.5 Index]