stamEval-class {stam} | R Documentation |
Objects of this class are returned by ctam.evaluate
. Results of all steps in a
structured analysis of microarray data are stored.
Objects can be created by calls of the form
new("stamEval", exprs, cv, fit, pred, testset)
, but using stam.evaluate
is recommended.
chip
:"character"
, the name of the chip for
which the classifier net is generated.exprs
:"matrix"
, the plain matrix of
expression levels [probesets x samples], rownames and colnames are expected to be
definedcv
:"stamCV"
, store cross validation resultsfit
:"stamFit"
, store model fitpred
:"stamPrediction"
, store
prediction resultstestset
:"numeric"
, indices of samples treated
as test set. The others are used for trainig.signature(x = "stamEval")
: generate HTML information on a
complete StAM analysis, but using stam.writeHTML
is recommended.Claudio Lottaz
stam.evaluate
, stamCV-class
,
stamFit-class
, stamPrediction-class
,
stam.writeHTML