plot.stamPrediction {stam} | R Documentation |
Plots nodewise performance vs. redundancy as well as nodewise sensitivity vs. specificity side by side.
plot.stamPrediction(x, outfile = NULL, aclass = NULL, main = NULL, minspec = 0.9, minsens = 0.1, maxsens = 1, res = 72, ps = FALSE, pointsize = 12, ...)
x |
object of class stamPrediction to be plotted |
outfile |
name of output file if postscript or PNG graphics is to be generated.
The extension of the file is chosen automatically according to the ps argument.
If no outfile is specified, an interactive plot is attempted |
aclass |
the name of the phenotype class of interest, usually the disease class. If set to NULL the first class in lexicographical order is chosen. |
main |
the main title of the plot, generated automatically if left blank |
minspec |
if given the corresponding horizontal line is drawn in the sensitivity vs. specificity plot |
minsens |
if given the corresponding vertical line is drawn in the sensitivity vs. specificity plot |
maxsens |
if given the corresponding vertical line is drawn in the sensitivity vs. specificity plot |
res |
resolution in points per inch |
ps |
if set to TRUE postscript output is generated |
pointsize |
the standard fontsize |
... |
additional arguments to be passed to plot |
Claudio Lottaz