PPIEX {simulatorAPMS} | R Documentation |
From the matrix of ISI, we can derive the PPCM matrix by the multiplication: ISI
data(PPIEX)
The format is: num [1:35, 1:35] 1 0 0 0 0 0 0 0 0 0 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:35] "YAL015C" "YAL017W" "YAL021C" "YAL036C" ... ..$ : chr [1:35] "YAL015C" "YAL017W" "YAL021C" "YAL036C" ...
This is an example PPCM where both the rows and the columns are indexed by the proteins present in the organism or cell. Here an entry of 1 means that two proteins share co-membership in some complex.
data(PPIEX)