runCompareComplex {simulatorAPMS}R Documentation

Function that sets up the ISI and estimate matrix for compare complex

Description

The runCompareComplex function takes two Bipartite Graph Matrices and re-structures these two matrices so that reasonable comparisons can be made between the two matrices. For instance, some proteins in the ISI might not have been found in our experimental simulation, so this protein would not be present in the estimate. Here we add such a protein as a row of the estimate with all zeros. When the two matrices have been modified, compareComplexes is called on these two particular matrices.

Usage

runCompareComplex(TSNMat, erComplex)

Arguments

TSNMat The ISI bipartite graph matrix
erComplex The estimate bipartite graph matrix

Details

This function is called prior to Compare Complex to set up the preliminaries. Otherwise, the compare complex algorithm fails to record the true data.

Value

The return value of runCompareComplex is the return value of CompareComplex which is a list of three matrics. See compareComplex() for details.

Author(s)

Tony Chiang

See Also

compareComplex

Examples


library(simulatorAPMS)
data(simEX)
data(APComEX)
runCompareComplex(simEX, APComEX)


[Package simulatorAPMS version 1.2.1 Index]