fullSimEX {simulatorAPMS}R Documentation

In Silico Interactome

Description

This is an ISI with proteins not participating in any protein complexes append to the bipartite graph. Usually, these non-participating proteins are not recorded in the ISI, but are needed in experimentation and simulation.

Usage

data(fullSimEX)

Format

The format is: num [1:35, 1:10] 1 0 0 0 0 0 0 0 0 0 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:35] "YAL015C" "YAL017W" "YAL021C" "YAL036C" ... ..$ : chr [1:10] "MBME1" "MBME2" "MBME3" "MBME4" ...

Details

The fullSimEX is the ISI that should be acted upon by the simulation methods of simulatorAPMS. The non-participating proteins will be key in the false positive observations.

Source

References

Examples

data(fullSimEX)
## maybe str(fullSimEX) ; plot(fullSimEX) ...

[Package simulatorAPMS version 1.2.1 Index]