PPIEX {simulatorAPMS}R Documentation

Protein-protein co-membership graph matrix

Description

From the matrix of ISI, we can derive the PPCM matrix by the multiplication: ISI

Usage

data(PPIEX)

Format

The format is: num [1:35, 1:35] 1 0 0 0 0 0 0 0 0 0 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:35] "YAL015C" "YAL017W" "YAL021C" "YAL036C" ... ..$ : chr [1:35] "YAL015C" "YAL017W" "YAL021C" "YAL036C" ...

Details

This is an example PPCM where both the rows and the columns are indexed by the proteins present in the organism or cell. Here an entry of 1 means that two proteins share co-membership in some complex.

Source

References

Examples

data(PPIEX)


[Package simulatorAPMS version 1.2.1 Index]