runAlignment {simulatorAPMS} | R Documentation |
This function takes the ISI, the estimate, either the Jaccard Matrix or the Kullbach-Liebler Matrix, and creates a matrix, called the bijMat that stores the alignment with the particular coefficient between the aligned complex pair from the Jaccard matrix or the KL-Matrix.
runAlignment(TSNMat, estMat, c2kMat)
TSNMat |
ISI bipartite graph matrix |
estMat |
estimate bipartite graph matrix |
c2kMat |
either Jaccard or Kulbach-Liebler matrix |
see above
The return value is bijMat with each row marking the alignment pair between the ISI and the estimate with the alignment coefficient in the third column.
Tony Chiang