compIndep {simulatorAPMS}R Documentation

This function determines how independent the prob distribution of the TSN and the estimate are with respect to one another

Description

This function calculates the probability that a protein is in Cluster C-i and the probability that a protein is in cluster K-j and then the joint probability that the protein is in both C-i and K-j. The function compares the joint distributions with the marginals.

Usage

compIndep(TSNMat, erMat, intersectMat)

Arguments

TSNMat The matrix representation of the bipartite graph of the ISI
erMat The matrix representation of the estimate of the ISI
intersectMat A matrix that records the intersection between the complexes of ISI and the complexes of the estimate

Details

see above

Value

The return value is a matrix of real numbers that account for how independent the marginals are from the joint distribution of protein membership to complexes.

Author(s)

Tony Chiang


[Package simulatorAPMS version 1.2.1 Index]