runAlignment {simulatorAPMS}R Documentation

Function preparing for alignment

Description

This function takes the ISI, the estimate, either the Jaccard Matrix or the Kullbach-Liebler Matrix, and creates a matrix, called the bijMat that stores the alignment with the particular coefficient between the aligned complex pair from the Jaccard matrix or the KL-Matrix.

Usage

runAlignment(TSNMat, estMat, c2kMat)

Arguments

TSNMat ISI bipartite graph matrix
estMat estimate bipartite graph matrix
c2kMat either Jaccard or Kulbach-Liebler matrix

Details

see above

Value

The return value is bijMat with each row marking the alignment pair between the ISI and the estimate with the alignment coefficient in the third column.

Author(s)

Tony Chiang


[Package simulatorAPMS version 1.2.1 Index]