phis {mmgmos}R Documentation

Estimated parameters of the distribution of phi

Description

The pre-estimated parameters of log normal distribution of phi, which is the fraction of specific signal binding to mismatch probe.

Usage

data(phis)

Format

The format is: num [1:3] 0.171 -1.341 0.653

Details

The current values of phis are estimated from Affymetrix spike-in data sets. It was loaded in the method "mmgmos".

phis[1:3] is respectively the mode, mean and variance of the log normal distribution of phi, and phis[1] is also the intial value of phi in the model optimisation.


[Package mmgmos version 1.2.0 Index]