Tools for analyzing Micro Array experiments


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Documentation for package `maanova' version 1.0.0

User Guides and Package Vignettes

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Help Pages

abf1 Data for a 18-array affymetrix experiment
adjPval Generate FDR adjusted P values for F test result.
arrayview View the layout of input data
consensus Build consensus tree out of bootstrap cluster result
createData Calculate and create a data object for Micro Array experiment
dyeswapfilter Gene filter for dye-swap experiment
exprSet2Rawdata Convert an object of exprSet to an object of Rawdata
fill.missing Fill in missing data
fitmaanova Fit ANOVA model for Micro Array experiment
fom Figure of Merit
geneprofile Expression plot for selected genes
gridcheck Plot grid-by-grid data comparison for arrays
kidney Kidney Data from CAMDA
macluster Clustering analysis for Micro Array experiment
makeModel Make model object for N-dye Micro Array experiment
matest Statistical test for Microarray experiment
paigen Data for a multiple factor 28-array expeirment
read.madata Read Micro Array data from TAB delimited simple text file
resiplot Residual plot for Micro Array Experiment
riplot Ratio intensity plot for 2-dye Micro Array experiment
Rmaanova.version Display the current version of the package
subset.madata Subsetting Micro Array data objects
transform.madata Micro Array experiment data transformation
transform.rawdata Micro Array experiment data transformation
varplot Variance component plot
volcano Volcano plot for F test results
write.madata Write Micro Array data to a TAB delimited simple text file