plotSimilarity {maDB} | R Documentation |
This function draws the similarity plot for the Similarity-class
objects. Basically it draws the template vector and the 5 rows of the data matrix with the smalles distance to the template in a plot.
plotSimilarity(ids, distances, data, template, restrict.to = min(5, length(data[, 1])), template.id = "custom", legend = TRUE, ...)
ids |
A list with the ids (rownames of the data matrix). |
distances |
The vector with the distances (each row of the data matrix to the template vector). |
data |
The data matrix (the expression or regulation patterns of a set of genes over a set of samples). |
template |
The template vector (the expression or regulation pattern of a gene over a set of samples). |
restrict.to |
How many patterns should be drawn. By default the 5 patterns with the smalles distance to the template pattern will be drawn. |
template.id |
The template gene id. |
legend |
If a legend should be drawn. |
... |
additional parameters. |
A plot of best matching gene expression or regulation patterns.
Johannes Rainer