bim.effects |
Bayesian QTL map of loci and effects |
bim.fdr |
Bayesian False Discovery Rate for QTL mapping |
bim.model |
Bayesian model selection for number and pattern of QTL across genome |
bim.nqtl |
Bayesian model selection for number and pattern of QTL across genome |
bim.pattern |
Bayesian model selection for number and pattern of QTL across genome |
bim.qtl |
Bayesian QTL estimation and mapping of loci |
bmapqtl.options |
Options Settings for BmapQTL |
Bnapus |
Cross structure for complete Brassica napus data |
fisch |
Eight QTL Stephens and Fisch simulated data |
plot.bim |
Diagnostics plots for Bayesian interval mapping |
plot.bim.diag |
Marginal and model-conditional summaries of Bayesian interval mapping diagnostics |
plot.bim.effects |
Bayesian QTL map of loci and effects |
plot.bim.fdr |
Bayesian False Discovery Rate for QTL mapping |
plot.bim.loci |
Jittered plot of Bayesian QTL loci samples by chromosome |
plot.bim.mcmc |
Bayesian MCMC sequence plots for burnin and iterations. |
plot.bim.model |
Graphical model assessment for Bayesian interval mapping |
plot.bim.qtl |
Bayesian QTL estimation and mapping of loci |
read.bim |
Read samples from WinQTL output |
read.bmapqtl |
Read and write options for WinQTL |
run.bmapqtl |
Run Bmapqtl reversible jump MCMC |
subset.bim |
Subsetting Bayesian interval mapping data |
summary.bim |
Summary of Bayesian interval mapping samples |
vern |
Eight week vernalization data for Brassica napus |
verngeo.bim |
Eight week vernalization data for Brassica napus |
vernpois.bim |
Eight week vernalization data for Brassica napus |
write.bmapqtl |
Read and write options for WinQTL |