assessAll {affycomp} | R Documentation |
Assessment functions.
Takes a couple of
exprSet-class
, one for spike in another for the
dilution and returns a list with necessary
information to create assessment plots.
assessAll(d,s,method.name=NULL,verbose=TRUE) affycomp(d,s,method.name=NULL,verbose=TRUE,return.it=TRUE)
d |
An exprSet-class containing
the exrpession measures for the Gene Logic's dilution experiment. |
s |
An exprSet-class containing
expression measures for the
Affymetrix's spike-in experiment. |
method.name |
Name of expression measure being assessed. |
verbose |
verbosity flag. |
return.it |
if TRUE returns assessment lists. |
assessAll
performs assessments for Figures 1-6. It is a wrapper
for assessDilution
and assessSpikeIn
.
affycomp
is a wrapper that does it all... including the plottitng
and creation of table.
Lists with the necessary information to make the Figures.
Rafael A. Irizarry