read.cdf.env {affxparser} | R Documentation |
This function parses a CDF file and creates a corresponding CDF environment using the Afymetrix Fusion SDK.
read.cdf.env(fname, complementary.logic = TRUE, verbose = 0)
fname |
name of the CDF file. |
complementary.logic |
is a sanity check performed where we require that the mm match for a pm probe should be exactly the complementary of the pm probe. This should be the case for all cdf files except very special custom files (and SNP chip files). |
verbose |
how verbose do we want to be? 0 means no output, higher numbers is more verbose. |
A cdf envirornment, for details see the link below.
~~further notes~~
James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen, khansen@stat.berkeley.edu
make.cdf.env
from makecdfenv
for the default approach to creating cdf environments as well as
affxparserInfo
for general information about the Fusion
SDK.
## Not run: read.cdf.env("test.CDF") ## End(Not run)