Concat {GeneR} | R Documentation |
Concatenate part of a sequence with part of another one into a third one.
concat(seq.one=0, seq.two=1, seq.dest=2, from1=1, to1=0, strand1=0, from2=1, to2=0, strand2=0)
seq.one |
Integer. First sequence number (bufseq) |
seq.two |
Integer. Second sequence number (bufseq) |
seq.dest |
Integer. Output sequence number (bufseq) |
strand1 |
Strand for first sequence 0 -> strand sens, 1 -> strand anti-sens. |
from1,to1 |
Begining and ending of first sequence, can be vectors. 0 represent the last nucleotide and 1 the first one. |
from2,to2 |
Begining and ending of second sequence, can be vectors. 0 represent the last nucleotide and 1 the first one. |
strand2 |
Strand for 2nd sequence 0 -> strand sens, 1 -> strand anti-sens. |
seq.dest or -1 if error.
L.Cottret
s1<- "aaacgctagcgcg" placeString(s1) s2<-"ttttctatcag" placeString(s2,1) concat(seq.one=0,seq.two=1, from1=2,to1=3,from2=8,to2=0, strand1=1) getSeq(2) #[1] "TTTCAG"