AtoR {GeneR}R Documentation

Conversion of addresses

Description

Convert addresses of a sequence.

Usage

AtoR(adrabs, seqno=0)
AtoT(adrabs, seqno=0)
RtoA(adrrel, seqno=0)
RtoT(adrrel, seqno=0)
TtoA(adrver, seqno=0)
TtoR(adrver, seqno=0)

Arguments

adrabs Integers (vector). Absolute Addresses
adrrel Integers (vector). Relative Addresses
adrver Integers (vector). Real Addresses
seqno Integer sequence number (bufseq)

Details

All details on addresses and globals variables are on page globals.

Value

Vector with new addresses

Note

All results depends on value of Strand. See: setStrand, getStrand.

Author(s)

L. Cottret

See Also

AtoT, RtoA, RtoT, TtoA, TtoR,setStrand, getStrand

Examples


s<-"cgtagtagctagctagctagctagctagc"
placeString (s, seqno=0)
# s of size 30
address <- c(4,20)

# With same strand: it does nothing
setStrand(1)
AtoR(address)
#[1] 26 10

# On reverse strand:
setStrand(0)
AtoR(address)
#[1]  4 20


[Package GeneR version 1.4.2 Index]