runPicard {snapCGH}R Documentation

Results of segmenting an MAList data object using the Picard et al algorithm found in the tilingArray library

Description

Wrapper calling the Picard et al segmentation algorithm on an MAList object. This function requires the library DNAcopy to be loaded.

Usage

  runPicard(input, maxSeg, maxk = 200, criteria = "BIC")

Arguments

input An object of class MAList or SegList
maxSeg integer of length 1, maximum number of segments (= 1 + maximum number of change points)
maxk integer of length 1, maximum length of a single segment
criteria Criteria for model selection. Options are "none", "AIC" and "BIC" (default)

Value

The function returns an object of class SegList

Author(s)

Mike Smith

See Also

segment MAList runHomHMM runGLAD SegList


[Package snapCGH version 1.4.0 Index]