IDProbes {snapCGH} | R Documentation |
Interactive version of genomePlot
. Allows the user to
click near a probe and the name of that probe will be displayed next
to it.
IDProbes(input, array = 1, naut = 22, Y = FALSE, X = FALSE, status, values, pch, cex, col, chrominfo = chrominfo.Mb, ylim = c(-2, 2), ylb = "Log2Ratio", chrom.to.plot = 1, xlim = c(0,NA))
input |
an object of class MAList or SegList |
array |
integer of the array (sample) to be plotted. |
naut |
number of autosomes in the organism |
Y |
TRUE if chromosome Y is to be plotted, FALSE otherwise |
X |
TRUE if chromosome X is to be plotted, FALSE otherwise |
status |
character vector giving the control status of each spot on the array, of same length as the number of rows of log2ratios(input) . If omitted, all points are plotted in the default color, symbol and size. |
values |
character vector giving values of status to be highlighted on the plot. Defaults to unique values of status . Ignored if there is no status vector. |
pch |
vector or list of plotting characters. Default to integer code 16. Ignored is there is no status vector. |
col |
numeric or character vector of colors, of the same length as values . Defaults to 1:length(values) . Ignored if there is no status vector. |
cex |
numeric vector of plot symbol expansions, of the the same
length as values . Defaults to 0.2 for the most common
status value and 1 for the others. Ignored if there is no
status vector. |
chrominfo |
a chromosomal information associated with the mapping of the data. |
ylim |
Minimum y-scale to use for plotting. |
chrom.to.plot |
Specify which chromosome to plot |
ylb |
label for the Y-axis. |
xlim |
limits for the x-axis |
Mike Smith