runPicard {snapCGH} | R Documentation |
Wrapper calling the Picard et al segmentation algorithm on an MAList
object. This function requires the library DNAcopy
to be loaded.
runPicard(input, maxSeg, maxk = 200, criteria = "BIC")
input |
An object of class MAList or SegList |
maxSeg |
integer of length 1, maximum number of segments (= 1 + maximum number of change points) |
maxk |
integer of length 1, maximum length of a single segment |
criteria |
Criteria for model selection. Options are "none", "AIC" and "BIC" (default) |
The function returns an object of class SegList
Mike Smith
segment
MAList
runHomHMM
runGLAD
SegList