find.param.five {snapCGH} | R Documentation |
This function is a workhorse of the process.data function. It outputs state means/variances and transitions matrices in the model with five states.
find.param.five(output.optim,var.fixed)
output.optim |
output of the optimisation with 5 underlying states |
var.fixed |
Logical variable - TRUE if you want to fix the variance to be the same across states |
Outputs the mean/variance, transition matrix, maximised likelihood and convergence information
John Marioni