recordSticky {simulatorAPMS} | R Documentation |
In the actual AP-MS technology, sticky proteins are identified and then removed from the process so sticky proteins do not influence the outcome of the protein-protein co-membership matrix nor the estimate from complex composition algorithms such as apComplex.
recordSticky(simMat, vSticky, vBaits)
simMat |
An adjcency matrix: the rows are indexed by bait proteins and the colunms are indexed by prey proteins |
vSticky |
The pre-determined vector of sticky proteins |
vBaits |
A character vector of the proteins used as baits |
The recordSticky function will return both the sticky proteins that are put into the function at the beginning as well as proteins which pull down a large number of prey proteins.
A character vector:
The return value is a vector of all the proteins that are considered
to be sticky in the simulation of AP-MS
Tony Chiang
library(simulatorAPMS) data(fullSimEX) data(vBaitsEX) recordSticky(fullSimEX, c(vBaitsEX[2], vBaitsEX[3]))