runCompIndep {simulatorAPMS} | R Documentation |
Makes sure that the same set of proteins are used for both each of the first two arguments.
runCompIndep(TSNMat, estMat, intersectMat)
TSNMat |
Incidence Matrix for the True State of Nature (TSN) bipartite graph |
estMat |
Incidence Matrix for the estimate bipartite graph |
intersectMat |
A matrix of integers: the (i,j)th entry of this matrix is the cardinality of the intersection between the i-th complex of TSN and the j-th complex of the estimate. |
See above
A numeric matrix:
Matrix that calculates the probablistic independence that a protein
will be in both complex C-i of the TSN and K-j in the estimate.
T. Chiang
library(simulatorAPMS) data(simEX) data(APComEX) CC = runCompareComplex(simEX, APComEX) runCompIndep(simEX, APComEX, CC[[1]])