oneChannelGUI-package | Set of functions extending the capability of affylmGUI package |
AboutextendedaffylmGUI | Starting oneChannelGUI package |
addAnnLib | Starting oneChannelGUI package |
changeMenu | Starting oneChannelGUI package |
delPLM | Deleting PLM object |
dfMAplot | MA and Volcano plots from data present in a limma derived topTable |
ExportNormalizedExpressionValues | Starting oneChannelGUI package |
extractAffyids | Extracting probe ids associated to a specific Gene Ontology term |
GOenrichment | Searching for Gene Ontology enriched terms within a set of differentially expressed genes |
GOstatsHelp | Starting oneChannelGUI package |
initialize.extAffylmGUI | Starting oneChannelGUI package |
inspecting.one.splice.index | Plotting on the profiles of splice indexes for a transcript cluster ID |
inspecting.splice.index | Plotting on a pdf file the profiles of splice indexes |
intensityFilter | intensity filtering with a mouse click |
intronicBg | Starting oneChannelGUI package |
IPAlistFilter | Filtering an expression set using a set of Entrez genes extracted from Ingenuity Pathways analysis (IPA) |
iqrFilter | Interquantile filtering with a mouse click |
libraryFilesDir | Starting oneChannelGUI package |
listFilter | Subsetting an expression set using a list of Affymetrix ids |
masigpro | The function executes maSigPro analysis |
masigpro.edesign | The function creates an edesign object needed to run maSigPro |
masigpro.view | The function allows the visualization of maSigPro results |
maSigProHelp | Starting oneChannelGUI package |
ML.edesign | The function creates an data frame containing the parameters useful for class prediction |
myExpresso | Running the affy expresso function with the widget |
myPLM | Using fitPLM function with a mouse click |
NewLimmaFile | Starting oneChannelGUI package |
ocPlotHist | Gene/Exon level density plots |
ocPlotPCA | Gene/Exon level density plots |
oneChannelGUI | Set of functions extending the capability of affylmGUI package |
oneChannelGUI.start | Starting oneChannelGUI package |
oneChannelGUIHelp | Starting oneChannelGUI package |
OpenAFile | Starting oneChannelGUI package |
OpenALimmaFile | Starting oneChannelGUI package |
OpenExonandTargetsfiles | Starting oneChannelGUI package |
OpenExonFile | Starting oneChannelGUI package |
OpenExonProbeFile | Starting oneChannelGUI package |
OpenLargeFile | Starting oneChannelGUI package |
OpenLargefiles | This function loads large data set made from tab delimited files |
OpenLimmaFile | Starting oneChannelGUI package |
PLM.plots | RLE and NUSE plots with a mouse click |
plotGO | Plotting parents of a GO term with few mouse click |
PlotOptionsv1 | A modified version of the function used in affyPLM library |
rawpCheck | Raw p-value distribution from limma analysis by a mouse click |
sample.size.evaluation | The function executes and plots results from ssize and delta fulction from the ssize packahe |
sample.size.evaluation1 | The function executes functions from the sizepower packahe |
SaveAsLimmaFile | Starting oneChannelGUI package |
showDataset | Grabbing info about the available expression set |
showTopTable | Modification of the function immplemented in affylmGUI to generate a topTable |
siggenes | The function executes SAM analysis implemented in siggenes bioconductor library |
siggenesHelp | Starting oneChannelGUI package |
spliceIndex | This function coverts the exon intenisty data in a slice index |
targetWidget | Widget to create a target file to load .CEL files |
templA | Generating a template A to be uploaded in Ingenuity Pathways analysis (IPA) |
trainTest | Creating a training set and a test set by a mouse click |
VennDiagram | Venn diagrams using two or three lists |
whichKindOfArray | Starting oneChannelGUI package |