read.celfiles {oligo} | R Documentation |
Reads CEL files.
read.celfiles(filenames, pkgname = NULL, phenoData = new("AnnotatedDataFrame"), featureData = NULL, description = NULL, notes = "", verbose = FALSE, rm.mask = FALSE, rm.outliers = FALSE, rm.extra = FALSE, tmpdir = getwd())
filenames |
a character vector with the CEL filenames. |
pkgname |
alternative data package to be loaded. |
phenoData |
phenoData |
featureData |
featureData |
description |
description |
notes |
notes |
verbose |
logical |
rm.mask |
logical |
rm.outliers |
logical |
rm.extra |
logical |
tmpdir |
path to the directory that will store the temporary files. |
tmpdir
should be a local directory where temporary files
(created by BufferedMatrix
package) are going to be stored. If
this points to a network drive, the process will be very slow. If it
points to a directory where the user does not have 'write'
permissions, the user will get errors.
|
if Expresssion arrays |
|
if Exon arrays |
|
if SNP arrays |
|
if Tiling arrays |
read.xysfiles
for NimbleGen arrays