CAMP |
Genotype data from the Childhood Asthma Management Program (CAMP) |
checkMarkers |
Basic data quality checks for markers |
fbat |
Family-Based Association Tests |
geneSet2Ped |
Translate a geneSet object to a ped matrix |
pedAFreq |
get allele frequencies |
pedFlagHomo |
flag homo/heterozygotes |
pedGFreq |
get genotype frequencies |
pedHardyWeinberg |
Test Hardy-Weinberg equilibrium for each marker based on parental data |
summaryPvalue |
summarize the test statistics and p-values |
viewFlagHomo |
flag homo/heterozygotes for specified marker |
viewHW |
View allele frequencies, Hardy-Weinberg equilibrium test statistics for specified marker |
viewstat |
view statistics for a marker |