viewHW {fbat}R Documentation

View allele frequencies, Hardy-Weinberg equilibrium test statistics for specified marker

Description

View allele frequencies, Hardy-Weinberg equilibrium test statistics for specified marker.

Usage

  viewHW(HW.object, markerName)

Arguments

HW.object object returned by the function 'pedHardyWeinberg'.
markerName a character string indicating the name of marker whose statistics are to be viewed

Value

resM A vector records the following quantities for the specified marker: nInfoInd (number of informative individuals, i.e. individuals whose genotypes contain no missing alleles for the specified marker), nGenotype (number of possible genotypes), nHET (number of heterozygous genotypes), nHOM (number of homozygous genotypes), nAllele (number of alleles), nMissing (number of missing alleles), chi2 (chi square test statistic), df (degree of freedom of the chi square test statistic under H0), p-value (pvalue of the test).
nGenotypeM number of possible genotypes for the specified marker.
genotypeM possible genotypes and their frequencies.
piVecM allele frequencies.

Examples

  data(CAMP)
  res<-pedHardyWeinberg(CAMP)
  viewHW(res, "m709")
  viewHW(res, "m654")
  viewHW(res, "m47")
  viewHW(res, "p46")
  viewHW(res, "p79")
  viewHW(res, "p252")
  viewHW(res, "p491")
  viewHW(res, "p523")

[Package fbat version 1.0.0 Index]