Family Based Association Tests for genetic data.


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Documentation for package `fbat' version 1.0.0

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CAMP Genotype data from the Childhood Asthma Management Program (CAMP)
checkMarkers Basic data quality checks for markers
fbat Family-Based Association Tests
geneSet2Ped Translate a geneSet object to a ped matrix
pedAFreq get allele frequencies
pedFlagHomo flag homo/heterozygotes
pedGFreq get genotype frequencies
pedHardyWeinberg Test Hardy-Weinberg equilibrium for each marker based on parental data
summaryPvalue summarize the test statistics and p-values
viewFlagHomo flag homo/heterozygotes for specified marker
viewHW View allele frequencies, Hardy-Weinberg equilibrium test statistics for specified marker
viewstat view statistics for a marker