probesets.in.range {exonmap}R Documentation

Find probesets and genes by location

Description

Given a start and end point, a strand, and a chromosome, find the probesets that hit within that region / any genes that occur there.

Usage

probesets.in.range(start, stop, strand, chr, debug=0)
genes.in.range(start, stop, strand, chr, debug=0)
probes.only.in.range(start, stop, strand, chr, debug=0)

Arguments

start Beginning of the region on a chromosome
stop End of the region on a chromosome
strand 1 is forward strand, -1 is reverse strand
chr Chromosome name - should be a character
debug debug data?

Details

Value

Returns all the probesets/genes that match to a given genomic region.

Author(s)

Michal Okoniewski

References

http://bioinformatics.picr.man.ac.uk/

Examples

 
  ## Not run: 
   probesets <- probesets.in.range(80000,1600000,1,"1");
   exonics <- select.probewise( probesets , filter="exonic")

## End(Not run)

[Package exonmap version 1.0.07 Index]