probesets.in.range {exonmap} | R Documentation |
Given a start and end point, a strand, and a chromosome, find the probesets that hit within that region / any genes that occur there.
probesets.in.range(start, stop, strand, chr, debug=0) genes.in.range(start, stop, strand, chr, debug=0) probes.only.in.range(start, stop, strand, chr, debug=0)
start |
Beginning of the region on a chromosome |
stop |
End of the region on a chromosome |
strand |
1 is forward strand, -1 is reverse strand |
chr |
Chromosome name - should be a character |
debug |
debug data? |
Returns all the probesets/genes that match to a given genomic region.
Michal Okoniewski
http://bioinformatics.picr.man.ac.uk/
## Not run: probesets <- probesets.in.range(80000,1600000,1,"1"); exonics <- select.probewise( probesets , filter="exonic") ## End(Not run)