array.subset |
Given an expression object get a particular subset of arrays defined by the phenoData |
array.subset,AffyBatch-method |
Given an expression object get a particular subset of arrays defined by the phenoData |
array.subset,exprSet-method |
Given an expression object get a particular subset of arrays defined by the phenoData |
col.rd.bl |
Use the X:MAP database to find annotated gene structure and generate a plot |
dbHuman |
Switching between databases |
dbMouse |
Switching between databases |
exclude.probewise |
Filtering of lists of probesets |
exon.details |
Use the X:MAP database to get detailed annotation for genes, transcripts and exons |
exon.to.gene |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
exon.to.probeset |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
exon.to.transcript |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
fc |
Simple pariwise comparisons on exon expression data |
fc,PC-method |
Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
fval |
Find probesets involved in differential splicing for multiple treatments |
fval,Splanova-method |
Class "Splanova" represents the result of a splicing anova calculations |
gene.details |
Use the X:MAP database to get detailed annotation for genes, transcripts and exons |
gene.legend |
Add a colour bar to an X:MAP gene plot |
gene.strip |
Use the X:MAP database to find annotated gene structure and generate a plot for multiple genes |
gene.to.exon |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
gene.to.exon.probeset |
Using X:MAP database to translate genes into exons and probesets |
gene.to.probeset |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
gene.to.transcript |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
genes.in.range |
Find probesets and genes by location |
group.indices |
Given an expression object get the array indices for a particular set of arrays |
pc |
Simple pariwise comparisons on exon expression data |
PC-class |
Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
plot.gene |
Use the X:MAP database to find annotated gene structure and generate a plot |
plot.gene.graph |
Use the X:MAP database to find annotated gene structure and generate a plot |
probes.only.in.range |
Find probesets and genes by location |
probeset.stats |
Generates summary statistics showing intron, exon and gene hits for the spefied probeset list |
probeset.to.exon |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
probeset.to.gene |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
probeset.to.probe |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
probeset.to.transcript |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
probesets.in.eset |
Filtering of lists of probesets |
probesets.in.range |
Find probesets and genes by location |
read.exon |
Read a Set of .CEL Files and Phenotypic Data representing exon arrays |
select.probewise |
Filtering of lists of probesets |
showXmapDatabase |
Switching between databases |
sig |
Find probesets involved in differential splicing for multiple treatments |
sig,Splanova-method |
Class "Splanova" represents the result of a splicing anova calculations |
splanova |
Find probesets involved in differential splicing for multiple treatments |
Splanova-class |
Class "Splanova" represents the result of a splicing anova calculations |
splicing.index |
Find probesets involved in differential splicing for two treatments |
symbol.to.gene |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
symbol.to.probeset |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
transcript.details |
Use the X:MAP database to get detailed annotation for genes, transcripts and exons |
transcript.to.exon |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
transcript.to.gene |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
transcript.to.probeset |
Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
tt |
Simple pariwise comparisons on exon expression data |
tt,PC-method |
Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
x.rma |
Sample exonmap dataset |
xmapDatabase |
Switching between databases |
xmapExon |
Linking to X:MAP browser |
xmapGene |
Linking to X:MAP browser |
xmapProbeset |
Linking to X:MAP browser |
xmapTranscript |
Linking to X:MAP browser |
[,PC-method |
Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
[<-,PC-method |
Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |