select.probewise {exonmap} | R Documentation |
Selects or removes probeset from a probeset list based on their specificity to the genome.
exclude.probewise(X,filter=c("exonic","intronic","intergenic","multitarget"), mt.level=1, debug=0) select.probewise(X,filter=c("exonic","intronic","intergenic","multitarget"), mt.level=1, debug=0) probesets.in.eset(X,data)
X |
Probeset list |
filter |
Type of the filter to be applied: 'exonic' probesets that match only exons, 'intronic' probesets that match only introns, 'multitarget', probesets that hit in more than one place, 'intergenic' - probesets that match only regions between genes, 'nulltarget', probesets that match nowhere |
mt.level |
multi-target score to filter by |
debug |
Output debug information. Gets more verbose with higher numbers. 0 supresses debug data. |
data |
An ExpressionSet object |
Vector of probeset names after filtering. probesets.in.eset
returns only those probesets in the list that are defined in the ExpressionSet.
Michal Okoniewski
http://bioinformatics.picr.man.ac.uk/
## Not run: probesets <- gene.to.probeset("ENSG00000005893"); exonics <- select.probewise(probesets, filter="exonic") intronics <- select.probewise(probesets, filter="intronic") ## End(Not run)