probeset.stats {exonmap}R Documentation

Generates summary statistics showing intron, exon and gene hits for the spefied probeset list

Description

Each column represent the uniqueness of a probesets' hits to the genome, to exons and to introns. Each value in a column can be 0,1, or another positive number. If 0, at least one of the probesets does not hit. If 1, all probesets hit exactly once. Any other number represents one or more probesets that hit in more than one place.

Usage

 
  probeset.stats(probesets,debug=0) 

Arguments

probesets a probeset list

Details

Value

A data frame with gene, exon and intron matches for each probeset.

Author(s)

Michal Okoniewski

References

http://bioinformatics.picr.man.ac.uk/

See Also

select.probewise exclude.probewise

Examples

 
  ## Not run: 
    probesets <- gene.to.probeset("ENSG00000005893"); 
    probeset.stats(probesets)
  
## End(Not run)

[Package exonmap version 1.0.07 Index]