gene.to.exon.probeset {exonmap}R Documentation

Using X:MAP database to translate genes into exons and probesets

Description

The functions create a tabular report of all the exons and probesets within input genes.

Usage

gene.to.exon.probeset (genes, probes.min=4,  debug=0) 
gene.to.exon.probeset.expr (x, genes, probes.min=4, debug=0)

Arguments

x eSet object containing expression data
genes List of Ensembl genes to translate into exons and probesets
probes.min Only return probesets that hit the genome with at least this number of probes
debug anything other than 0 returns debugging information. Verbosity increases with value

Details

Value

A data frame containing all the exons, probesets, genes and gene symbol - in case of gene.to.exon.probeset.expr also with relevant expression data.

Author(s)

Michal Okoniewski

References

http://bioinformatics.picr.man.ac.uk/

Examples

 
  ## Not run: 
    report <- gene.to.exon.probeset(c("ENSG00000175793","ENSG00000090273")); 
    report.expr <- gene.to.exon.probeset.expr(x.rma, c("ENSG00000175793","ENSG00000090273")); 
  
## End(Not run)

[Package exonmap version 1.0.07 Index]