normalize {codelink} | R Documentation |
Takes a Codelink object and applies normalization to intensity values.
normalize(object, method="quantiles", log.it=TRUE, preserve=FALSE)
object |
an object of class "Codelink". |
method |
method to use in normalization. |
log.it |
logical; if data should be log2. |
preserve |
logical; if Ri slot should be preserved. |
A Codelink object with normalized intensity values.
Diego Diez
# data(codelink.example) # Background correction. # codelink.example <- bkgdCorrect(codelink.example, # method="half") # Normalization. # codelink.example <- normalize(codelink.example, # method="quantile")