Manipulation of Codelink Bioarrays data.


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Documentation for package `codelink' version 1.4.0

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arrayNew Create a new x11 device
arraySize Determine size of Codelink array
as.matrix.Codelink Return a matrix of intensity values
bkgdCorrect Background correction of intensity values.
Codelink-class Class Codelink
codelink.example Codelink instance codelink.example
createWeights Create weight for Codelink chips
cutCV Calculate cutoff based in CV.
decDetect Determine decimal type of Codelink files
dim.Codelink Return the dimension of a Codelink object.
fc2Cond Select probes based on fold change calculation
imageCodelink Image plot of Codelink arrays
logCodelink Application of logCodelink to Codelink object
mergeArray Merge Codelink Bioarrays Data
na2false Set NAs to FALSE
normalize Normalization wrapper for Codelink objects.
normalize.loess Normalized chips using cyclic loess.
plotCorrelation Plot correlation scatterplot between two arrays
plotCV Plot of CV
plotDensities Plot Densities
plotDensities,Codelink-method Plot Densities
plotMA MA plot
printHead Print briefly a Codelink object
readCodelink Read Codelink Bioarrays Data
readHeader Read Header from Codelink Bioarrays Files
readHeaderXLS Read Header from XLS exported Codelink Bioarrays Files
reportCodelink Write a report of genes selected in HTML
selCV Select based on CV cutoff.
show,Codelink-method Class Codelink
SNR Calculate SNR
writeCodelink Write a Codelink object to file.
[,Codelink-method Class Codelink