normalize {codelink}R Documentation

Normalization wrapper for Codelink objects.

Description

Takes a Codelink object and applies normalization to intensity values.

Usage

    normalize(object, method="quantiles", log.it=TRUE, preserve=FALSE)

Arguments

object an object of class "Codelink".
method method to use in normalization.
log.it logical; if data should be log2.
preserve logical; if Ri slot should be preserved.

Details

Value

A Codelink object with normalized intensity values.

Note

Author(s)

Diego Diez

See Also

Examples

#       data(codelink.example)
        # Background correction.
#       codelink.example <- bkgdCorrect(codelink.example,
#        method="half")
        # Normalization.
#       codelink.example <- normalize(codelink.example,
#        method="quantile")

[Package codelink version 1.4.0 Index]