snpMeta-class {GGtools}R Documentation

Class "snpMeta" – HapMap (or Wellcome INBREDS) -based metadata structures for SNPs

Description

HapMap (or Wellcome INBREDS) -based metadata structures for SNPs

Objects from the Class

Objects can be created by calls of the form new("snpMeta", ...).

Slots

meta:
Object of class "environment" holds the table in the meta element, in the form of a data.frame, with rownames giving the SNP ids, and columns pos, strand
chromosome:
Object of class "character" string identifying chromosome on which SNPs are documented

Methods

[
signature(x = "snpMeta"): ...
chromosome
signature(x = "snpMeta"): ...
coerce
signature(from = "snpMeta", to = "data.frame"): ...
dim
signature(x = "snpMeta"): ...
nrow
signature(x = "snpMeta"): ...
show
signature(object = "snpMeta"): ...

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

References

www.hapmap.org , www.well.ox.ac.uk/mouse/INBREDS

Examples

data(chr20meta)
chr20meta["rs6060535",]

[Package GGtools version 1.4.0 Index]