chr20GGdem |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
chr20meta |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
chromosome,snpMeta-method |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
coerce,oGtypeExSet,ExpressionSet-method |
Class "oGtypeExSet" ~~~ |
coerce,snpMeta,data.frame-method |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
countRare |
compute rare allele count from a hapmap file |
df2snpMeta |
compute rare allele count from a hapmap file |
dim,snpMeta-method |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
exclMono |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
exprs,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
extract_p |
compute model fits over a sequence of SNPs |
fastAGM |
compute model fits over a sequence of SNPs |
fastHET |
compute model fits over a sequence of SNPs |
geneLocs |
gene metadata from NCBI |
geneLocs_hsa |
gene metadata from NCBI |
geneLocs_mmu |
gene metadata from NCBI |
genesym |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
genesym-class |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
genoStrings |
create a character vector of genotype value strings |
getpsid |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
getRare |
compute rare allele count from a hapmap file |
gse2031GG |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
hgfocusSYMMEMO |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
HM2rac |
compute rare allele count from a hapmap file |
HMworkflow |
function to bind together HapMap genotyping results and expression data |
INB34snpMeta |
convert a Wellcome 'Strains' genotyping file to rare allele count form |
INBREDSworkflow |
convert a Wellcome 'Strains' genotyping file to rare allele count form |
initialize,oGtypeExSet-method |
Class "oGtypeExSet" ~~~ |
initialize,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
litex |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
litsn |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
make_racExSet |
create a racExSet from simpler constituents |
mgu74av2SYMMEMO |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
nrow,snpMeta-method |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
oGtypeExSet-class |
Class "oGtypeExSet" ~~~ |
oneFit |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
oneFit,racExSet,character,character,function-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
oneFit,racExSet,genesym,character,function-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
oneFit,racExSet,list,character,function-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
oneFit,racExSet,list,formula,function-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
oneFit,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
pdd |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
plot_EvG |
plot expression vs genotype |
plot_mlp |
compute model fits over a sequence of SNPs |
racAssays |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
racAssays,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
racExSet |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
racExSet-class |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
rarebase |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
rarebase,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
rb20M |
create a racExSet from simpler constituents |
Sa20M |
create a racExSet from simpler constituents |
show,oGtypeExSet-method |
Class "oGtypeExSet" ~~~ |
show,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
show,snpMeta-method |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
show,snpScreenResult-method |
compute model fits over a sequence of SNPs |
SNPalleles |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
SNPalleles,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snpID |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snpID-class |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snpMeta-class |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
snpMetaWhole |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
snpMetaWhole-class |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
snpNames |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snpNames,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snps |
accessor for genotype data in a ggExprSet |
snps,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snps3PrimeTo |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snps5PrimeTo |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
snpScreen |
compute model fits over a sequence of SNPs |
snpScreen,racExSet,snpMeta,genesym,formula,function,missing-method |
compute model fits over a sequence of SNPs |
snpScreen,racExSet,snpMeta,genesym,formula,function,numeric-method |
compute model fits over a sequence of SNPs |
snpScreenResult-class |
compute model fits over a sequence of SNPs |
snpsNear |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
Strains2rac |
convert a Wellcome 'Strains' genotyping file to rare allele count form |
thinHM2meta |
compute rare allele count from a hapmap file |
thinHM2rac |
compute rare allele count from a hapmap file |
wrapSNPmetaWh |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |
[,racExSet,ANY,ANY,ANY-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
[,racExSet-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
[,snpMeta,ANY,ANY,ANY-method |
Class "racExSet" for combining RareAlleleCount representations of SNPs, gene expression data, and other phenotype data |
[,snpMeta-method |
Class "snpMeta" - HapMap (or Wellcome INBREDS) -based metadata structures for SNPs |