make_racExSet {GGtools} | R Documentation |
create a racExSet from simpler constituents
make_racExSet(exprs, racs, rarebase, SNPalleles, pd, mi, anno)
exprs |
matrix of processed expression values, GxN, rownames are reporterNames |
racs |
matrix of rare allele counts, SxN, rownames are snp ids (rs numbers) |
rarebase |
character S-vector of rare base |
SNPalleles |
character S-vector of strings of form "A/B" indicating biallelic polymorphism options |
pd |
old phenoData instance |
mi |
MIAME instance |
anno |
string for annotation referencing |
Vince Carey <stvjc@channing.harvard.edu>
data(litsn) data(litex) data(pdd) data(rb20M) data(Sa20M) dem = make_racExSet( exprs=litex, racs=t(litsn), pd=pdd, mi=new("MIAME"), rarebase=rb20M, SNPalleles=Sa20M, anno="hgfocus") dem