HMworkflow {GGtools}R Documentation

function to bind together HapMap genotyping results and expression data

Description

function to bind together genotyping results and expression data

Usage

HMworkflow(gzfn, emat, pd, mi, anno)

Arguments

gzfn path to gzipped genotyping results
emat matrix of conforming expression results (colnames match some of those in gzfn)
pd phenoData instance
mi MIAME instance
anno string indicating platform, such as "hgfocus"

Details

builds a racExSet-class instance

Value

builds a racExSet-class instance

Author(s)

Vince Carey <stvjc@channing.harvard.edu>

Examples

data(chr20GGdem)
fi = system.file("fileDemos/geno20demo.txt.gz", package="GGtools")
HMworkflow(fi, exprs(chr20GGdem)[1:100,],
  phenoData(chr20GGdem), experimentData(chr20GGdem),
  "hgfocus")

[Package GGtools version 1.4.0 Index]