make_racExSet {GGtools}R Documentation

create a racExSet from simpler constituents

Description

create a racExSet from simpler constituents

Usage

make_racExSet(exprs, racs, rarebase, SNPalleles, pd, mi, anno)

Arguments

exprs matrix of processed expression values, GxN, rownames are reporterNames
racs matrix of rare allele counts, SxN, rownames are snp ids (rs numbers)
rarebase character S-vector of rare base
SNPalleles character S-vector of strings of form "A/B" indicating biallelic polymorphism options
pd old phenoData instance
mi MIAME instance
anno string for annotation referencing

Author(s)

Vince Carey <stvjc@channing.harvard.edu>

Examples

data(litsn)
data(litex)
data(pdd)
data(rb20M)
data(Sa20M)
dem = make_racExSet( exprs=litex, racs=t(litsn), pd=pdd, mi=new("MIAME"),
  rarebase=rb20M, SNPalleles=Sa20M, anno="hgfocus")
dem

[Package GGtools version 1.4.0 Index]