xcmsEIC-class {xcms} | R Documentation |
This class is used to store and plot parallel extracted ion
chromatograms from multiple sample files. It integrates with the
xcmsSet
class to display peak area integrated during peak
identification or fill-in.
Objects can be created with the getEIC
method of
the xcmsSet
class. Objects can also be created by calls
of the form new("xcmsEIC", ...)
.
eic
:mzrange
:rtrange
:rt
:"raw"
or "corrected"
to specify retention
times contained in the object
groupnames
:xcmsSet
object used to generate EICs
signature(object = "xcmsEIC")
: get groupnames
slot
signature(object = "xcmsEIC")
: get mzrange
slot
signature(x = "xcmsEIC")
: plot the extracted ion
chromatograms
signature(object = "xcmsEIC")
: get rtrange
slot
signature(object = "xcmsEIC")
: get sample names
No notes yet.
Colin A. Smith, csmith@scripps.edu