Submatrix-class {pairseqsim} | R Documentation |
Amino Acid Substitution Matrices
new("Submatrix", ...)
.
or data(EPAM100
.Data
:"matrix"
substitution matrix copyright
:"character"
GNU GPL2 info
:"character"
namehead
:"character"
descriptionalphabet
:"character"
alphabet
Class "matrix"
, directly.
signature(object = "AASequence", sub =
"Submatrix")
: compute teh score for aligning the sequence with itself signature(object = "Submatrix")
: showsignature(object = "Submatrix", path =
"character")
: read Substitution matrices from EMBOSS package Witold Eryk Wolski http://r4proteomics.sourceforge.net witek96@users.sourceforge.net
http://www.hgmp.mrc.ac.uk/Software/EMBOSS/overview.html