read.spot {genArise} | R Documentation |
Read Spot from File
Description
Read all file, but only extract the interested columns and create a Spot object.
Usage
read.spot(file.name, cy3, cy5, bg.cy3, bg.cy5, ids, symdesc, header =
FALSE, sep = "\t", is.ifc = FALSE, envir)
Arguments
file.name |
a connection or a character string giving the
name of the file to read where each column represent the spot components. |
cy3 |
column that represent Cy3. |
cy5 |
column that represent Cy5. |
bg.cy3 |
column that represent BgCy3. |
bg.cy5 |
column that represent BgCy5. |
ids |
column that represent Id. |
symdesc |
textbf{optional} identifier besides Id column. |
header |
the logical value of the header input file |
sep |
the separator in the inputfile |
is.ifc |
If is.ifc = TRUE this experiment was done in the
Unit of Microarray from Cellular Phisiology Institute. |
envir |
Environment where are the genArise variables. You don't
need to specify this argument. |
See Also
write.spot
.
[Package
genArise version 1.10.0
Index]