samroc.result-class {SAGx} | R Documentation |
Class "samroc.result" for results of the function samrocN
Description
The class samroc.result is the output of a call to
samrocN
and the input of various other
functions.
Slots
di
:- Object of class "numeric". Observed test statistic.
diff
:- Object of class "numeric". Estimate of effect, e.g. difference between group means.
se
:- Object of class "numeric". Standard error of
diff
.
d0
:- Object of class "matrix". Permutation test statistics.
p0
:- Object of class "numeric". The estimated proportion unaffceted genes.
s0
:- Object of class "numeric". The fudge factor.
pvalues
:- Object of class "numeric". The p-values.
N.list
:- Object of class "integer". The optimal top list size among the sizes suggested.
errors
:- Object of class "numeric". The sum of false postives and false negatives given a list that includes the
current gene.
formula
:- Obeject of class "formula". The linear model formula used.
contrast
:- Object of class "numeric". The contrast estimated.
annotation
:- Object of class "character". Annotation or comments regarding the analysis. By default the date.
N.sample
:- Object of class "integer". The number of samples.
B
:- Object of class "integer". The number of premutations.
call
:- Object of class "character". The call to the function.
id
:- Object of class "character". The probeset ids.
error.df
:- Object of class "integer". The error degrees of freedom.
Methods
- show
- (samroc.result): Summarizes the test result.
- plot
- (samroc.result): Plots the density of the observed test statistic and that of the corresponding null distribution
Author(s)
Per Broberg
See Also
samrocN
[Package
SAGx version 1.7.1
Index]