Merge Maid


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Documentation for package `MergeMaid' version 2.6.0

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AverageDuplicates Merge gene expression data sets
check Merge gene expression data sets
check.length Class mergeCoeff, a class for storing regression coefficients.
coeff Class mergeCoeff, a class for storing regression coefficients.
coeff,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
coeff<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
exprs,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
exprs<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneNames,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneNames<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneStudy Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneStudy,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneStudy<-,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
hist,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
intCor Correlation of Correlations
intCor,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
intcorDens plot of density functions of integrative correlations
intcorDens,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
integrative.cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
integrative.cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
intersection ExpressionSet with all common genes in a mergeExpressionSet
intersection,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
isna Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
length,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
maxcors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
maxcors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
maxintcor Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
mergeCoeff Class mergeCoeff, a class for storing regression coefficients.
mergeCoeff-class Class mergeCoeff, a class for storing regression coefficients.
mergeCor Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
mergeCor-class Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
mergeData MergeMaid instance data for merging
mergeExpressionSet Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
mergeExpressionSet-class Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
mergeExprs Merge gene expression data sets
mergeget Merge gene expression data sets
modelOutcome Compare regression coefficients across studies
modelOutcome,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
names,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
names<-,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
notes,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
notes,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
notes<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
pairwise.cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
pairwise.cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
phenoData,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
phenoData<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
plot,list-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
plot,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
sample1 MergeMaid instance data for merging
sample2 MergeMaid instance data for merging
sample3 MergeMaid instance data for merging
stdcoeff Class mergeCoeff, a class for storing regression coefficients.
stdcoeff,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
stdcoeff<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
subsetmES Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
summary,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
zscore Class mergeCoeff, a class for storing regression coefficients.
zscore,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
zscore<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
[,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them