as.data.frame.SpliceExprSet |
convert to a data.frame |
as.data.frame.SpliceSites |
convert to a data.frame |
barplot.SpliceSites |
barplot for SpliceSites |
buildSpliceSites |
Functions to query PALSdb |
eset |
Example data for splicegear |
exprs,SpliceExprSet-method |
Class "SpliceExprSet" |
exprs<-,SpliceExprSet-method |
Class "SpliceExprSet" |
getFinalRatio |
functions to perform SPLICE |
getPALSdbURL |
Functions to query PALSdb |
getRelSignStrength |
functions to perform SPLICE |
grid.expand.gp |
convenience functions for grid |
grid.make.numeric2npc |
convenience functions for grid |
grid.plot |
Class "SpliceExprSet" |
grid.plot,Probes,missing-method |
Class "Probes" |
grid.plot,Probes,SpliceSites-method |
Class "Probes" |
grid.plot,SpliceExprSet,missing-method |
Class "SpliceExprSet" |
grid.plot,SpliceSites,missing-method |
Class "SpliceExprSet" |
grid.plot.Probes |
Plot splicegear objects |
grid.plot.SpliceExprSet |
Plot splicegear objects |
grid.plot.SpliceSites |
Plot splicegear objects |
initialize,Probes-method |
Class "Probes" |
initialize,SpliceSites-method |
Class "SpliceSites" |
isProbeOnSpliceSite |
Check the presence of probes on certain exons |
isSpliceSiteOnProbe |
Check the presence of probes on certain exons |
matchprobes2Probes |
create Probes object from matchprobes results |
plot,Probes,missing-method |
Class "Probes" |
plot,Probes,SpliceSites-method |
Class "Probes" |
plot,Probes-method |
Class "Probes" |
plot,SpliceExprSet,missing-method |
Class "SpliceExprSet" |
plot,SpliceSites,missing-method |
Class "SpliceSites" |
plot,SpliceSites-method |
Class "SpliceSites" |
plot,SpliceSitesGenomic,missing-method |
Class "SpliceSitesGenomic" |
plot,SpliceSitesGenomic-method |
Class "SpliceSitesGenomic" |
plot.Probes |
plot a SpliceSites object |
plot.SpliceExprSet |
plot a SpliceExprSet |
plot.SpliceSites |
plot a SpliceSites object |
plot.SpliceSitesGenomic |
Function to plot SpliceSitesGenomic objects |
probes |
Example data for splicegear |
Probes-class |
Class "Probes" |
queryPALSdb |
Functions to query PALSdb |
show,Probes-method |
Class "Probes" |
show,SpliceExprSet-method |
Class "SpliceExprSet" |
show,SpliceSites-method |
Class "SpliceSites" |
sort.SpliceExprSet |
A function to sort a SpliceExprSet |
SpliceExprSet-class |
Class "SpliceExprSet" |
spliceset |
Example data for splicegear |
spliceSites |
Class "SpliceExprSet" |
spliceSites,SpliceExprSet-method |
Class "SpliceExprSet" |
SpliceSites-class |
Class "SpliceSites" |
SpliceSitesGenomic-class |
Class "SpliceSitesGenomic" |
split.SpliceSites |
split an instance of SpliceSites |
spsites |
Example data for splicegear |