ddCtSet-class {prada}R Documentation

Class for storage of relative rtPCR results

Description

A subclass extending virtual class eSet designed to store the raw data and results from a ddCt analysis of rtPCR data.

Creating Objects

see eSet for details new("ddCtSet",
phenoData = ...., # object of class \code{AnnotatedDataFrame}
experimentData = .... # object of class \code{MIAME}
annotation = .... # object of class character
assayData = .... # object of class assayData
)
The assayData slot can be instantiated using function assayDataNew.

Slots

Inherited from eSet:

assayData:
Contains matrices with equal dimensions, and with column number equal to nrow(phenoData). assayData must contain matrices dCt,dCt.error,Ct.error, ddCt,ddCt.error,Difference,level.err, number,numberNA,Plate. SeeddCt for details. Class:AssayData
phenoData:
See eSet
experimentData:
See eSet
annotation:
See eSet

Methods

exprs, exprs<-
get or set expression data
initialize
constructor, not to be called by the user

Author(s)

Florian Hahne


[Package prada version 1.8.0 Index]