$.cytoFrame |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
analysePlate |
Apply a statistic to the data from each well in a plate |
appendGates |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
appendGates, gateSet_method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
appendGates,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
appendGates,gateSet-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
applyGate |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
applyGate,cytoFrame,character-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
applyGate,cytoFrame,gate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
applyGate,cytoFrame,gateSet-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
applyGate,cytoFrame,logical-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
applyGate,cytoFrame,numeric-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
applyGate,matrix,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
applyGate,matrix,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
as.all |
Coercion without introduction of NAs |
as.gateSet |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
as.gateSet,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
barploterrbar |
Barplot with error bars. |
colnames,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
colnames,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
colnames<-,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
colnames<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
combineFrames |
Combine the cytoFrames within a cytoSet according to some grouping factor |
combineGates |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
csApply |
Apply a function over the intensities in a cytoSet |
cytoFrame |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
cytoFrame-class |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
cytoSet |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
cytoSet-class |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
ddCt |
Apply the ddCt method for a given data set |
ddCtSet-class |
Class for storage of relative rtPCR results |
description,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
description<-,cytoFrame,character-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
devDims |
Device Dimensions for plate plots |
devRes |
Resolution of current plotting device |
drawGate |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
drawGate,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
drawGate,matrix-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
eListWrite |
Write the eList |
exprs,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
exprs,ddCtSet-method |
Class for storage of relative rtPCR results |
exprs<-,cytoFrame,matrix-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
exprs<-,ddCtSet,matrix-method |
Class for storage of relative rtPCR results |
fitNorm2 |
Fit bivariate normal distribution. |
gate |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
gate,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
gate-class |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
gate<-,cytoFrame,gate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
gate<-,cytoFrame,gateSet-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
gateSet |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
gateSet-class |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
getPradaPar |
Set and query global parameters for functions in the prada package |
initialize,ddCtSet-method |
Class for storage of relative rtPCR results |
length,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
length,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
names,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
names,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
names<-,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
names<-,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
ncol,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
nrow,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
pData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
phenoData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
phenoData<-,cytoSet,phenoData-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
plot,cytoFrame,missing-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
plot,cytoSet,missing-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
plotNorm2 |
Plot fitted bivariate normal distribution. |
plotPlate |
Plot a well statistic for microtiter plates. |
readCytoSet |
Create a cytoSet object from one or more FCS 3.0 files |
readFCS |
Read an FCS 3.0 file |
readFCSdata |
Auxiliary functions for readFCS |
readFCSgetPar |
Auxiliary functions for readFCS |
readFCSheader |
Auxiliary functions for readFCS |
readFCStext |
Auxiliary functions for readFCS |
readSDM |
Read an SDM file |
removeCensored |
Remove rows that contain censored data |
removeCensored,cytoFrame-method |
Remove rows that contain censored data |
removeCensored,data.frame-method |
Remove rows that contain censored data |
removeCensored,matrix-method |
Remove rows that contain censored data |
setPradaPars |
Set and query global parameters for functions in the prada package |
show,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
show,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
show,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
show,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
threePanelPlot |
Visualize cytometry data |
thresholds |
Discretize a two-dimensional data space into quadrants by applying thresholds |
touchFCS |
Check for FCS files |
vpLocation |
Absolute location of current viewport |
[,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
[,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
[[,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[[,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
[[<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |