hiv |
Microarray intensity expression levels for HIV type 1 infection of CD4+ T-Cell lines |
like |
Microarray intensity expression levels for like-like data |
neg.contr |
Indicator of known truly non differentially expressed genes in the hiv dataset |
norm1a |
Function for normalizing the mean of single replicate log ratios |
norm1b |
Function for normalizing the mean and variance (or just the variance) of single replicate log ratios |
norm1c |
Function for normalizing the mean of average-across-replicates log ratios |
norm1d |
Function for normalizing the mean and variance of average-across-replicates log ratios |
norm2c |
Function for normalizing the mean of average-across-replicates log ratio differences |
norm2d |
Function for normalizing the mean and variance of average-across-replicates log ratio differences |
nudge1 |
Function for normalizing data, fitting a normal-uniform mixture and estimating probabilities of differential expression in the case where the two samples are being compared directly |
nudge2 |
Function for normalizing data, fitting a normal-uniform mixture and estimating probabilities of differential expression in the case where the two samples are being compared indirectly through a common reference sample |
pos.contr |
Indicator of known truly differentially expressed genes in the hiv dataset |