probeDiagnostics {beadarray}R Documentation

Diagnostics plot for a bead type

Description

Function to produce 4 diagnostic plots on the same page for a particular bead type on an array

Usage

probeDiagnostics(BLData, probe, array, label = TRUE,
log = FALSE, n = 3, showOutliers = TRUE, ...)

Arguments

BLData BeadLevelList object
probe numeric value giving the ProbeID of the bead type we want to plot
array numeric value of the array we want
label if TRUE all beads will be assigned a numeric label
log if TRUE outliers for this bead type will be calculated using log2 bead intensities
n outliers for this bead type are beads with intensities more than 'n' standard deviations from the mean
showOutliers boolean specifying whether the outliers should be shown on the plots
... further graphical parameters to plot

Details

Combines the results of 4 seperate plotting functions onto the same page

Value

Plot is produced on the current graphical device.

Author(s)

Mark Dunning

Examples


data(BLData)

probeDiagnostics(BLData, 2, 1)

probeDiagnostics(BLData, 2, 1, log=TRUE)

probeDiagnostics(BLData, 2, 1, log=TRUE, label=FALSE)


[Package beadarray version 1.0.0 Index]