getUnregisteredBeads {beadarray}R Documentation

Finds unregistered beads

Description

Function returns a list of all beads on a particular array that were not decoded

Usage

getUnregisteredBeads(BLData, array)

Arguments

BLData an BeadLevelList object
array numeric value for the array that we want to find unregistered beads on

Details

Beads which cannot be decoded are assigned a ProbeID of 0 and excluded from further analysis. The function simply looks up all beads which have a ProbeID of 0 and returns the index of the bead (1-49777).

Value

vector of numeric specifying the indices of beads which were not decoded properly

Author(s)

Mark Dunning

Examples


data(BLData)

getUnregisteredBeads(BLData, 1)

u = getUnregisteredBeads(BLData,1)

u[1:20]

BLData$ProbeID[33,1]

##For a quick test to see where these beads are located we can use 'plotBeadLocations'

plotBeadLocations(BLData, ProbeID=0, array=1, label=FALSE)


[Package beadarray version 1.0.0 Index]