getUnregisteredBeads {beadarray} | R Documentation |
Function returns a list of all beads on a particular array that were not decoded
getUnregisteredBeads(BLData, array)
BLData |
an BeadLevelList object |
array |
numeric value for the array that we want to find unregistered beads on |
Beads which cannot be decoded are assigned a ProbeID of 0 and excluded from further analysis. The function simply looks up all beads which have a ProbeID of 0 and returns the index of the bead (1-49777).
vector of numeric specifying the indices of beads which were not decoded properly
Mark Dunning
data(BLData) getUnregisteredBeads(BLData, 1) u = getUnregisteredBeads(BLData,1) u[1:20] BLData$ProbeID[33,1] ##For a quick test to see where these beads are located we can use 'plotBeadLocations' plotBeadLocations(BLData, ProbeID=0, array=1, label=FALSE)