probeDiagnostics {beadarray} | R Documentation |
Function to produce 4 diagnostic plots on the same page for a particular bead type on an array
probeDiagnostics(BLData, probe, array, label = TRUE, log = FALSE, n = 3, showOutliers = TRUE, ...)
BLData |
BeadLevelList object |
probe |
numeric value giving the ProbeID of the bead type we want to plot |
array |
numeric value of the array we want |
label |
if TRUE all beads will be assigned a numeric label |
log |
if TRUE outliers for this bead type will be calculated using log2 bead intensities |
n |
outliers for this bead type are beads with intensities more than 'n' standard deviations from the mean |
showOutliers |
boolean specifying whether the outliers should be shown on the plots |
... |
further graphical parameters to plot |
Combines the results of 4 seperate plotting functions onto the same page
Plot is produced on the current graphical device.
Mark Dunning
data(BLData) probeDiagnostics(BLData, 2, 1) probeDiagnostics(BLData, 2, 1, log=TRUE) probeDiagnostics(BLData, 2, 1, log=TRUE, label=FALSE)