graphSumStats {ScISI}R Documentation

An initiation function to generate graph statistics

Description

This function takes an in silico interactome and a list of Y2H experimental data (see details) and generates various graph summary statistics.

Usage

graphSumStats(ISI, bait2PreyL)

Arguments

ISI An incidence matrix representation of a bi-partite graph of an in silico interactome
bait2PreyL A list of y2h information. The data structure is that of intactInfo.rda of the y2hStat package

Details

Value

complex A character vector of the constituent members of the proteinn complex of interest
complexBait A character vector of those protein members which were also tested as baits in the y2h experiment
notBait A character vector of those protein members which were not tested as baits
avgDegOut The average out-degree of the bait proteins of the complex of interest
notIsolated A character vector of proteins that showed experimental binary affiliation for some other complex member
y2hGraph An instance of the class graph; a graphNEL induceds Y2H graph on the protein complex
popMeanDegree The population mean degree derived from the bait proteins
edgeProp The estimated edge proportions derived between undirected Y2H edges
degBait A named list; each name corresponds to each member of the protein complex with the entry the number of proteins to which it is adjacent

Author(s)

T Chiang

Examples



[Package ScISI version 1.2.0 Index]