recCompSize {ScISI}R Documentation

A function that records the relative sizes of complex C-i from one bipartite graph with complex K-j from a different bipartite graph.

Description

This function takes two bipartite graph matrices, bg1 and bg2. For each complex C-i of bg1, we find the relative size of C-i for every complex K-j of bg2. A matrix of these ratios is returned with all cardinalities of C-i as the numerators and K-j as denominators. A second matrix is calculated where the cardinality of K-j is the numerator and C-i is the denominator.

Usage

recCompSize(bg1, bg2)

Arguments

bg1 The first bipartite graph as an incidence matrix
bg2 The second bipartite graph as an incidence matrix

Value

The return value is a list:

OneOverTwo The matrix where the cardinalities of complexes from bg1 are numerators.
TwoOverOne Matrix where cardinalities of complexes from bg2 are numerators.

...

Author(s)

Tony Chiang

Examples

go = getGOInfo(wantAllComplexes = FALSE)
goM = createGOMatrix(go)
mips = getMipsInfo(wantAllComplexes = FALSE)
mipsM = createMipsMatrix(mips)
recCompSize(goM, mipsM)

[Package ScISI version 1.2.0 Index]