sumStats {ScISI} | R Documentation |
A function to calculate some summary statistics between an two
interactomes
Description
This function takes in a named list of in silico interactomes (by its
incidence matrix representation of the bi-partite graph). The function
compares each interactome pairwise (with itself as well as with each
other interactome) and generates some summary statistics: e.g. the
number of redundant protein complexes, the number of protein
sub-complexes one interactome may posses with respect to some other
interactome (possibly itself), etc.
Usage
sumStats(imList, pathToSave = NULL)
Arguments
imList |
A named list of in silic interactomes (incidence matrix) |
pathToSave |
A character vector of a path location to where the
summary statistics will be saved |
Details
Value
redundantM |
A symmetric matrix with the row and column names
named by the interactome names. The shows the number of redundancies
(i.e. the number of repeated protein complexes) within two
interactomes |
subM |
A matrix with the row and column names
named by the interactome names. Each entry details how many protein
sub-complexes are found within the interactome indexed by the row
with respect to the interactome indexed by the column |
Author(s)
TC
Examples
gavin <- getAPMSData("Gavin")
krogan <- getAPMSData("Krogan")
imList <- lisst()
imList[[1]] <- gavin
imList[[2]] <- krogan
names(imList) <- c("Gavin", "Krogan")
sumStats(imList)
[Package
ScISI version 1.2.0
Index]