createGOMatrix {ScISI}R Documentation

A function to create the bipartite graph (BG) incidence matrix from the protein complexes parsed from the GO Database

Description

This function takes the output from the getGOInfo function and creates the bipartite graph (BG) incidence matrix from the output.

Usage

createGOMatrix(cMembers)

Arguments

cMembers A named list consisting of vectors. Each list item is named by a protein complex GO ID and points to a character vector where each character vector consists of the proteins composing of that protein complex.

Value

A bipartite graph matrix of the corresponding GO protein complexes where the rows are indexed by the protein names and the colunms by GO ID's.

Author(s)

Tony Chiang

Examples

cMembers = getGOInfo(wantAllComplexes = FALSE)
createGOMatrix(cMembers)

[Package ScISI version 1.2.0 Index]