yeastData-class {ScISI}R Documentation

Class "yeastData"

Description

A class representing an interactome of yeast. The object is in the form of a dataframe with three generic methods. The methods take two arguments: the first is the instance of the class yeastData; the second is the name of a protein complexe with respect as given by the bi-partite graph incidence matrix.

Objects from the Class

Objects can be created by calls of the form new("yeaseData", reference = dataFrameISI).

Slots

yeastData:
The yeastData slot is merely a data frame for some in silico interactome.

Methods

ID
signature(object = "yeastData", name = "character"): ...
Desc
signature(object = "yeastData", name = "character"): ...
getURL
signature(object = "yeastData", name = "character"): ...

Author(s)

Tony Chiang

Examples

go = getGOInfo(wantAllComplexes = FALSE)
goM = createGOMatrix(go)
cNames = colnames(goM)
goDF = createGODataFrame(go, goM)
goOb = createYeastObj(goDF)
ID(goOb, cNames[5])
Desc(goOb, cNames[5])
getUrl(goOb, cNames[5])

[Package ScISI version 1.2.0 Index]